Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19]
19 sequences; 22,301,977 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq19 123 3e-23
seq14 114 2e-20
>seq19
Length=1505300
Score = 123 bits (136), Expect = 3e-23
Identities = 307/462 (66%), Gaps = 23/462 (5%)
Strand=Plus/Minus
Query 125748 CCAGCTTGCCG-TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806
||||||| | | || || ||||| ||||||||||||||||| ||||| || | | | |
Sbjct 42252 CCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAG 42193
Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 125864
||||| ||||| || || || ||||| | | ||| | | || ||| ||| | |
Sbjct 42192 ATATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCA 42133
Query 125865 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 125924
||| || | ||| | |||| |||||||||||| |||| || || ||||| |
Sbjct 42132 AC--GAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGC 42075
Query 125925 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984
||| ||| ||| ||||| || || | |||| ||| ||| || || |||||
Sbjct 42074 CGAGAAGGGCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAG 42015
Query 125985 GCACGATGGCGTGAA------TGGTGTCCACCCCAGGTCTAT---TGCGCAAAGTCTTGA 126035
| |||||| | || ||| ||| ||| | || || | || ||
Sbjct 42014 TGATGATGGCCTCAACAGCACTGGGGTC------AGGACGATAGTTGAGGTGAGA---GA 41964
Query 126036 AGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGA 126095
| || |||||| || ||| || || |||||||||||||||||||| || ||||
Sbjct 41963 ACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGA 41904
Query 126096 AGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCG 126155
|| ||||| ||||||||||| |||||||||| |||||| || | || || ||
Sbjct 41903 AGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGC 41844
Query 126156 AGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCT 126197
|||||| || ||||| || || || |||| || ||||
Sbjct 41843 TGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCT 41802
>seq14
Length=2198313
Score = 114 bits (126), Expect = 2e-20
Identities = 676/1069 (63%), Gaps = 28/1069 (3%)
Strand=Plus/Plus
Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656
||||| |||||||| || |||||||| || |||||||| || | ||||| ||
Sbjct 1893762 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 1893821
Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716
| ||| | || || || || | || ||| | ||| || || || ||||||
Sbjct 1893822 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 1893881
Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 113774
|| ||||| || ||||| | || || || | | | || |||||||||| ||
Sbjct 1893882 GCGCCTCGATCAGCGGCCATCTGAA-CA-ATAGTACGTTGAGAAATTTCCCACACGGTCT 1893939
Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834
|||| || ||| || || ||||||| | ||| ||||||||||| ||||| |
Sbjct 1893940 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 1893999
Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894
|| || | | ||||||| | ||||| || || | | || || | | |
Sbjct 1894000 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 1894059
Query 113895 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATATTGG 113951
| ||| | ||||||| ||||| || || || || | | || ||||| ||||
Sbjct 1894060 GCCATGGGT--TGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAG-TAGATGTTGG 1894116
Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC-GGTGGAGGCTGTGGGC 114010
||||| || ||||||||||| ||| | |||||| | | | |||| ||| || |||
Sbjct 1894117 AGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGC 1894175
Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070
||||| || | || | |||||||||| ||| | | || | || || |
Sbjct 1894176 ATGGGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCA 1894235
Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATACCT 114127
|||||||| || || | ||| | | | ||||||||| | || ||||||||
Sbjct 1894236 TCCCAGTCCCAG---AGGTCGGTCGGCGTTACGTTCCACATATCGTATTGAAGGATACCC 1894292
Query 114128 TGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAG 114187
|| || | || || ||||| | | |||||| || || |||| || | ||| |
Sbjct 1894293 TGAGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACAC 1894352
Query 114188 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 114247
|| | || || || || | ||||| || || | | |||| ||||||
Sbjct 1894353 GATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCT 1894412
Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 114307
||| || || || | ||||| | || |||| || || || ||||| ||
Sbjct 1894413 TCGGGAGAGTCGAAGGGCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCC 1894472
Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTT--TCGAGCGGTCTCCACGGGATAAAAAT 114365
| |||| |||||||| | | ||| ||| ||| || || || || || |
Sbjct 1894473 ACAGCAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGT 1894530
Query 114366 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 114425
||| || || | || || | ||| || || |||| |||| |||||| || ||
Sbjct 1894531 TCCCGTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGC 1894590
Query 114426 CGTAATCAAA---ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 114482
| |||| | || |||| | ||| ||| | |||||||||| || || ||||
Sbjct 1894591 CAAAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCA 1894647
Query 114483 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTG 114542
||||| || | |||||| | ||||| || | ||||| || || | ||||
Sbjct 1894648 AGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTG 1894707
Query 114543 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 114602
|||| || || || | |||||||||||| |||| ||| || | |||||||||||
Sbjct 1894708 AACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAA 1894767
Query 114603 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 114651
|||| | || | || |||||||| |||| || |||||| || | |||
Sbjct 1894768 GCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCA 1894816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597353458128520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |