Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq16 109 5e-19 seq19 100 3e-16 >seq16 Length=1024933 Score = 109 bits (120), Expect = 5e-19 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||||||| |||| || ||||| | | |||||| || ||||| || ||| | Sbjct 591219 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 591278 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || ||||| || | | |||| |||||||| ||||| || || Sbjct 591279 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 591338 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| || | ||||| || | ||| || | |||||| | || || | Sbjct 591339 ATACCTTCCTTGTC-CTGGATCTTTGTCTTGACGTTG-TCTATCGTGTCGCTGGATTCTA 591396 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || ||||| || || || || ||||||||| || Sbjct 591397 CTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATGCCT 591449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| |||||||| ||||||||||| | || || ||||||||| ||||| || | Sbjct 591478 TTGATTCCTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGCTGTTTTCCTG 591537 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| ||||| || ||||| ||||| || || || ||||| || | || || || Sbjct 591538 CAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTC-CTGGATCTTGGTCTTG 591596 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||||| | || || ||||| | || | || || || |||||||| Sbjct 591597 ACGTTG-TCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGT 591655 Query 138597 TTTTAC 138602 ||| || Sbjct 591656 TTTCAC 591661 >seq19 Length=1505300 Score = 100 bits (110), Expect = 3e-16 Identities = 300/453 (66%), Gaps = 25/453 (6%) Strand=Plus/Plus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC--CGGCAGCTTTGCCGC 52453 ||||| | || ||||| || |||||||| | |||| ||| |||| ||| ||| | Sbjct 41802 AGCGCCTTGTTGCCTTTGCTGCCGTCGAGGG--TATTTTCTTCAGCGGCTCCTTCGCCTC 41859 Query 52454 CATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGAT 52513 |||||| | | || | | || | |||||||| || || ||| |||||| | || Sbjct 41860 CATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCAT 41919 Query 52514 ATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGA 52572 || || |||||||| || ||||| || ||||| ||||| || | | | | | Sbjct 41920 CTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTT--------CTC-TCA 41970 Query 52573 CCGAAAAATTGGATTCGGACACGA----TCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626 || || | | | | ||| | | | |||| ||| ||| || || || | | Sbjct 41971 CCTCAACTATCG-TCCTGACCCCAGTGCTGTTGAGGCCATCATCACTGAAGCAGTCACCA 42029 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 |||| ||||||| || || | || || || | || || |||||||| || || Sbjct 42030 TCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTAAGC 42089 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA 52745 ||||||| ||||||| ||||| || || ||| | || | || |||| || | | | Sbjct 42090 TCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTT--GCTCTTGGTAACAA 42147 Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 |||| || |||| | ||| || || || || ||| |||| || || || | ||||| Sbjct 42148 GAAGTTCTACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCTGGCAA 42207 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||| ||||||||||| || || || || Sbjct 42208 GACCAACTTCTTCGAGAAGCGTGTTGGAGATTA 42240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262282137680