Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19 159 3e-34 seq16 136 4e-27 >seq19 Length=1505300 Score = 159 bits (176), Expect = 3e-34 Identities = 356/518 (69%), Gaps = 16/518 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||| || || || || || ||||| || || || || || || | Sbjct 42259 CATGACACCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 42200 Query 132651 CAAGGAAATGAGCGTC-ATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGC 132706 | ||| || | ||| || || || |||||||||| ||||||||| | |||| | | Sbjct 42199 GAGGGAGAT-ATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTAC 42141 Query 132707 CGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCG 132765 | | || | ||||| ||||| ||||| |||||||| ||||| || ||||| | || | Sbjct 42140 CAAG-AG--CAACGAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAG 42084 Query 132766 CAATTAAGTCCCAGCAGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGC 132824 || | | | || || || |||| || || || ||||| | || |||||||||| Sbjct 42083 CATTCATG-CCGAGAAGG-GCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGT 42026 Query 132825 GACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTC-GGCCGTTGCACCAAATGCT 132883 ||| || || |||| ||| || ||| || | | | || || || | | || Sbjct 42025 GACTGCTTCAGTGATGATGGCCTCAACA-GCACTGGGGTCAGGACGATAGTTGAGGTGAG 41967 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||||| | ||| ||||| || || | ||| ||||| | ||| |||||||||||| Sbjct 41966 AGAACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGG 41907 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | ||||||||||| || || || || ||||| || |||| |||||| || Sbjct 41906 AGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGC 41847 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CT 133062 | ||||| | ||||||||||| || || || || ||||||| |||| |||| | Sbjct 41846 CGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAAT 41787 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 |||| || | |||||| || | ||||| |||||||| Sbjct 41786 TCTTATCTTG-GATCCATCGAATGGCCCAATCGGCCTT 41750 Score = 129 bits (142), Expect = 6e-25 Identities = 194/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||||||||||||| || || |||| ||||| | |||||||| ||| || ||| Sbjct 41625 TAGGTGTCGATGAGGAGAGAGTATGTTTCGGAGTGAATATTCTCCATCATGATCTGGAAG 41566 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || ||||| || || || ||||| ||||| | |||||| || | || || Sbjct 41565 CCATAGAAGCATCGAGCTTCCGGTACCTGGACTTCGTTGCTGAAACGTTCAAGGAGGTTC 41506 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||| |||||||| || ||||||||| ||||||| ||||| |||||| || Sbjct 41505 TCGTTAACGATGCCATCTGAGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGAATCGT 41446 Query 133348 TCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 || | ||| || | | | ||||||| | | ||||| || ||||| | ||| ||| Sbjct 41445 TCATCGTCATTGAGCCTGTTGTTCCAGTCGTGAATATCCTTAGAGAGGTCAATCTCTTCG 41386 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || || || ||||| |||||||| Sbjct 41385 GCAGTCCAGAAAGAAGCTTCAGCTTTCTTGTACAT 41351 >seq16 Length=1024933 Score = 136 bits (150), Expect = 4e-27 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||||||||| ||||| | || || || ||| | Sbjct 591445 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 591386 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| ||| |||| ||||| || || ||||| | |||| Sbjct 591385 GACACGATAGACAACG--TCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACC 591328 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || || |||||||| || |||| || || || ||| || | Sbjct 591327 AGCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATA 591268 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||| ||| |||||||||||||||| ||| ||||||| Sbjct 591267 ACATCCAGAAGGAGAGC-ACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 591219 Score = 118 bits (130), Expect = 1e-21 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| ||||| || || ||||| |||||||| | || ||||| ||| ||||| | Sbjct 591666 TAGTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCA 591607 Query 38311 TGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | |||| || |||| ||||| ||||| || || | ||||| || || Sbjct 591606 TCGACAACG--TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACG 591549 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 ||||| | || || |||||||| || |||| || |||||| |||||||||||||| Sbjct 591548 TCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCA 591489 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| | || || || | || || ||| || | || ||| Sbjct 591488 AAAGGAATCAACTCTCCACCTTGTCCTTCGTCTGCGTGGAGGC 591446 Score = 109 bits (120), Expect = 5e-19 Identities = 129/171 (75%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| || |||||| |||| || ||| ||| ||||| | | |||| | || Sbjct 591949 TCACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACG--TCAA 591892 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| ||||| ||||| || ||| | ||||| ||||| || || | || || Sbjct 591891 GACCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGG 591832 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 |||||||| || |||| ||||||||| ||||||||||||||| ||||| Sbjct 591831 AAAACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 591781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172681208960