Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-15 seq17 86.0 5e-11 >seq6 Length=1400444 Score = 100 bits (110), Expect = 2e-15 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| || ||||| || ||||| ||||| | ||| | || | || | | ||| Sbjct 1383421 ACGAGACGGTTGTCAAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACT 1383362 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || ||||| | | || || | ||||| ||| |||||||| | ||| Sbjct 1383361 TCGAAGATACCCTCTTCGATGGTCAGGAGGGAGACATCGAAGGTACCACCACCGAGATCG 1383302 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || || ||| || || || ||||| || |||| ||||||| Sbjct 1383301 AAGATGAGAACGTTGCGCTCACCGTCGGCCTTCTTGTCGAGACCGTAGGCAATAGCAGCA 1383242 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 ||||| || || || || || | | || || ||||| ||||| || || || ||| Sbjct 1383241 GCAGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTA 1383182 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || ||||| | || || ||||| || || ||||| ||||| || || || Sbjct 1383181 GTAGCTTGACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGC 1383132 >seq17 Length=1034021 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 668842 TGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGA 668901 || |||| ||| || |||||||||||| | || || |||||||||||||||| || Sbjct 915437 TGGAAGACTAAAGGGAAAAGAAGGTCGTCTCCGACAGAACCTGATGGGAAAACGTGTGGA 915378 Query 668902 TATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGT 668961 | || || ||||| || |||||| ||||| ||| | |||| |||| ||||| || Sbjct 915377 CTTCTCAGCTCGTACTGTCATTACTGGCGATCCGAATCTCTCTCTTGATGAGGTTGGAGT 915318 Query 668962 TCCTCTTATTATTGC 668976 |||| ||| ||||| Sbjct 915317 TCCTATTAGCATTGC 915303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821457157414