Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6 264 1e-65 seq13 141 1e-28 seq18 125 9e-24 seq14 122 1e-22 >seq6 Length=1400444 Score = 264 bits (292), Expect = 1e-65 Identities = 472/686 (69%), Gaps = 6/686 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || || || | |||||||| |||||||| Sbjct 1383409 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACTTCGAAGATACCC 1383350 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| ||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 1383349 TCTTCGATGGTCAGGAGGGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGAACG 1383290 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || |||| ||||| ||||||||||| || ||||| || || || || || Sbjct 1383289 TTGCGCTCACCGTCGGCCTTCTTGTCGAGACCGTAGGCAATAGCAGCAGCAGTGGGCTCG 1383230 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || ||||| || Sbjct 1383229 TTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTAGTAGCTTGACGC 1383170 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || | ||| |||| |||| | ||||||| Sbjct 1383169 TGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCGTTGTTGACGGTGCCACCGAGA 1383110 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| ||||| || ||||| || || || || |||| | Sbjct 1383109 TAGGCCTCGGCGGTCTCACGCATCTTGGTGAGGACCATGGAGGAGATTTCCTCAGGGGTG 1383050 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||||| ||| || || || || || || | | ||||| || |||| | | Sbjct 1383049 AACTGCTTCTCCTCGCCCTTGAACTCGACCTGGACGATGGGCTT-GCCGCTCTTC--TCG 1382993 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | |||||| | | | | ||||| ||| | ||||||| ||| ||||| | | Sbjct 1382992 ACAACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCGGCGTCGTTGAACTTGCGT 1382933 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| ||||| || || ||||| | ||||||||||| |||||||| Sbjct 1382932 CCAATGAGACGCTTAGCATCGAAGACGGTGTTGATAGGGTTCATGGCGACCTGGTTCTTT 1382873 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || || ||| | || || || || Sbjct 1382872 GCGGCATCTCCAATGAGACGCTC---GGTGTCTGTGAAGGCAACGAAGGAGGGAGTGGTG 1382816 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || || ||||| || || ||||| | |||||| | | ||| || ||||| Sbjct 1382815 CGGTTTCCCTGATCGTTGGCGATGATTTCAATGCGGTCATCACGGAAGATACCCACGCAG 1382756 Query 8117 GAATACGTTGTTCCTAAATCAATACC 8142 || ||||| || || ||||| ||||| Sbjct 1382755 GAGTACGTGGTACCCAAATCGATACC 1382730 Score = 167 bits (184), Expect = 3e-36 Identities = 256/365 (70%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || || ||||||||||| || | || || Sbjct 1383914 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACGGCTTCATCGGGGTTGATGGACTTGTTT 1383855 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || | || || | ||| | || || || ||||| || || || Sbjct 1383854 GGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGATCTTGGGGATACGAGTAGAA 1383795 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | || || || | || || || |||||||| | ||| || || | Sbjct 1383794 CCACCGACGAGGACAATCTCGTGGACGGAGGACTTGTCGATCTTGGCGTCACGGAGGACT 1383735 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 |||||||| |||||| ||||| | |||| || || ||||| ||||| ||| Sbjct 1383734 CGCTCGACAGGCTCCATAGTGGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGAGCA 1383675 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| ||||| || || || | |||||||| ||||||| || Sbjct 1383674 CGGGTGATGGAGGTGTAGAAGTCAACACCCTCATAGAGAGAATCAATCTCAATGGAGGTC 1383615 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||||| | || ||||| || ||||| || || || || | ||| || || Sbjct 1383614 TGGGCAGCAGAAGAGAGAGTACGCTTAGCACGCTCGCAGGCAGTGCGGAGACGGCGGAGA 1383555 Query 7382 GCACG 7386 ||||| Sbjct 1383554 GCACG 1383550 >seq13 Length=2958713 Score = 141 bits (156), Expect = 1e-28 Identities = 359/539 (67%), Gaps = 9/539 (2%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| ||||| || || | || ||| || | |||||| | | || ||| Sbjct 2047780 TCCTCGAAACGAGCACGAGTGATCTGGGCATTGAAGTCCTCACCGTCGAAGAGAGAGTCA 2047721 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || | ||| || || | | || | || ||||| || ||||| || || || Sbjct 2047720 ATCTCGACGGTAGTCTGAGTAGCGCTGGAAAGAGTACGCTTAGCACGCTCGCAAGCAGTG 2047661 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | | || ||||| | | || |||||| | ||| ||||| || || ||||| Sbjct 2047660 CGGAGTCTTCGGAGGGCTCTGGAGTCACCGGAGAGATCCTTCTTGGTCTTGCGGGTAAAC 2047601 Query 7427 TCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 || | |||||| |||| |||| | | |||||||| | |||||| | || ||||| Sbjct 2047600 TCCTTCTTGAAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGACCACCAAGATGGGTATC 2047542 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || || || || ||||| |||| ||| || | ||||| | | || ||||| || Sbjct 2047541 ACCGGCAGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTGAGGAGGGAGACATCGAA 2047482 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTC---GTCTTTGTTCTTA- 7600 ||||||||||| || || | ||||| || || || | || | ||| | | | Sbjct 2047481 AGTACCACCACCGAGATCGTAGATGAGGACATTGCGCTCCTTCTCGGACTT--TCCAGAG 2047424 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 |||||||||| || || || || || || || || || || ||||| ||| ||| || Sbjct 2047423 CCGAGACCGTAGGCAATGGCGGCAGCAGTGGGCTCGTTGATGATACGGAGAACGTTGAGA 2047364 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || ||||| | | ||||| || || || |||| || ||||| |||||||| ||| Sbjct 2047363 CCGGCAATGGCACCAGCATCCTTGGTGGCCTGTCTCTGGTTGTCGTTGAAGTAGGCTGGG 2047304 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || || | ||| || | | ||| |||| ||||| | | || || | |||||||| Sbjct 2047303 ACAGTGATGACAGCCTTGGAGACGCTCTTTCCGAGCTTAGTCTCGGCAACCTCTTTCAT 2047245 >seq18 Length=2912371 Score = 125 bits (138), Expect = 9e-24 Identities = 228/328 (70%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || ||||| || ||| || ||| ||| Sbjct 808674 TCGAAATCTTCACCACCCAAGTGAGTGTCACCAGCGGTAGCCAAGACCTCGAAGGCACCC 808733 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | || ||||| || ||||||||||| || || | | || | Sbjct 808734 TTGTCAATGGAGAGGAGAGAGACATCGAAAGTACCACCACCGAGATCGTAGACGATGA-- 808791 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || ||||| || | ||||||||||| || ||||| || || ||||| || Sbjct 808792 -TC-TGGCGCTCGTCACCAGTCATGTCGAGACCGTAGGCAATAGCTGCGGCAGTTGGCTC 808849 Query 7636 ATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 |||| || || || ||| |||||| || || || || | || || || || || |||| Sbjct 808850 GTTAACAACACGGATGAC-GTTCAGACCGGCGATGGTACCAGCGTCCTTTGTGGCCTGTC 808908 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 || || || |||||||| ||||| || ||||| || | |||| ||| |||| Sbjct 808909 TCTGGTTGTCATTGAAGTAGGCGGGGACAGTGACGACAGCATGGCTGACAGTCTCTCCGA 808968 Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782 | ||| || ||||| || ||||| || Sbjct 808969 GGTACTTCTCGGCGATGTCCTTCATCTT 808996 >seq14 Length=2198313 Score = 122 bits (134), Expect = 1e-22 Identities = 338/514 (66%), Gaps = 7/514 (1%) Strand=Plus/Plus Query 105484 TCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACAAAACAATGAC 105543 || ||||||| ||||| || || | | || |||| || ||| || || | | | Sbjct 1894942 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 1895001 Query 105544 CAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAG 105603 |||| |||| |||||| || |||||||||||||| ||| |||||| ||| | || Sbjct 1895002 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAAT 1895061 Query 105604 AGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGA 105663 || || || | | ||||| | || || ||| || | || || || || | Sbjct 1895062 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 1895121 Query 105664 ATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTAC----GACGCCCCGC 105719 ||||| ||||||||||| || | |||| |||| | ||| || | ||| | | Sbjct 1895122 ATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC-C 1895180 Query 105720 TTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGA 105779 || | ||||||||| || || ||| |||| || | ||| || | || || | ||| Sbjct 1895181 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 1895240 Query 105780 TGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCC 105839 | || || |||||| ||| | ||| | ||||| | | ||| |||| | || Sbjct 1895241 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 1895300 Query 105840 AATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTC 105899 || || ||||| ||| || ||||| || | ||| ||||| ||||| || Sbjct 1895301 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 1895360 Query 105900 GATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTAC 105958 |||||| || ||||| | |||| ||||| || || | |||||| || ||| || || | Sbjct 1895361 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGG-CTGCGGGGTTC 1895419 Query 105959 CAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 | |||||||| ||||| || | ||||| |||| Sbjct 1895420 CGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAA 1895453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132649155960