Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq14 150 2e-31 seq19 109 7e-19 seq12 86.0 8e-12 >seq14 Length=2198313 Score = 150 bits (166), Expect = 2e-31 Identities = 471/718 (66%), Gaps = 16/718 (2%) Strand=Plus/Minus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | || |||||| || | || || |||||||| | || | |||||||||||| || Sbjct 1894816 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 1894757 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 |||| |||| |||||| ||||||||||| | ||| ||| ||||| ||||| || Sbjct 1894756 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 1894697 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 112457 || |||||| | |||| || | | ||||||| || || |||||| | || || || Sbjct 1894696 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 1894637 Query 112458 GCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGA 112516 || || || | | ||||||| | | | || || |||| || |||||||| || Sbjct 1894636 GCCCTTCCTACCTTTGTGGATGCTGTTCGCGGTGA-ATACGATTTTGGCAAACTCCATGA 1894578 Query 112517 AGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT 112576 ||| || | || | |||| | |||||| | ||||| | || ||||| || Sbjct 1894577 AGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCGGT 1894518 Query 112577 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCT 112636 ||| || || | ||| | | || || || |||| | | || ||||| || || Sbjct 1894517 TGAAGAGGCACGACGAAGCAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGGGCCT 1894458 Query 112637 CGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA 112696 || |||| ||| | | ||| | | || || || |||||| ||| | || Sbjct 1894457 TGCCGATGCTTTCCTCGCTCTTCGACTGCCCTTCGACTCTCCCGAAGCCAAGCTTTTGAA 1894398 Query 112697 TGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA--GGCGAGTTCGGAGTTGGCA 112754 | | || || ||||| | || || || || |||| | || | | ||| || Sbjct 1894397 CACCCAAATCTTCGAGACCCTTTACCATGCTGC-GTTGACCGCATCGTGTGAACTTGCCA 1894339 Query 112755 GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAA 112814 |||| ||||||||||| ||| ||||||||||| | ||| || || | |||||| Sbjct 1894338 -AGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTCTCAGGGTATCCTTCAA 1894280 Query 112815 TTTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGA 112870 | ||||||| |||| || | |||| | || || |||||||| | ||| || | Sbjct 1894279 TACGATATGT-GGAACGTAACGCCGACCGACCT---CTGGGACTGGGATGGTCTTAAAGC 1894224 Query 112871 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 112930 ||| || | ||| | ||||||||| | | | || || |||||||| ||| Sbjct 1894223 TGAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTTGCGCCCATGCCAACTGCCAG 1894164 Query 112931 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 |||| || | |||||| | || || ||||||||||| ||||| | |||||||| Sbjct 1894163 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTA 1894107 Score = 131 bits (144), Expect = 2e-25 Identities = 410/630 (65%), Gaps = 19/630 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||| | ||||| || || |||||||||| || || || |||| || Sbjct 1895546 CCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTA 1895487 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTT 111730 | || |||||| | ||||||| | || |||| ||| || | || || ||||| Sbjct 1895486 ATTGAAACATACAATCTCATGTCCCA-GAAATACTTCACCCATGCCTCTCCCACTCTCTT 1895428 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || || || || || |||||| | || ||||| |||| | |||||||| Sbjct 1895427 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 1895368 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTCAAAGTGGG 111846 ||| | || || |||| ||| |||||| ||||| || |||||| | Sbjct 1895367 CAGTATCGAAGGTATCTACGACAC----ACTGAAGACCTGTGCTTTGATTTCAAAGACTG 1895312 Query 111847 CTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTA 111906 |||| || ||||| | || |||| | || | |||| | || ||| || | Sbjct 1895311 CTGGAGGAATCGGTCTTAACGTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAA 1895252 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || || | || || | || |||||||| || || ||| ||| || | | Sbjct 1895251 CCAACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGAT 1895192 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| |||| | ||| ||||| ||| || | || |||| || ||||||| Sbjct 1895191 ATGTCGACCAGGGTGGCAACAAGCGTCC--AGGTGCCTTT-GCTATCTACCTGGAGCCAT 1895135 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| |||||| | ||||||||||| | || ||||| || | || || | | Sbjct 1895134 GGCACGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCC 1895075 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||| ||||| |||| || | |||| ||| ||| | ||||||||| ||||||| Sbjct 1895074 GTGCCCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAA 1895015 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| |||| ||||| | || || || || | |||| || || | | |||| | | Sbjct 1895014 AGAATGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACG 1894955 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGT 112230 | || ||||| || || | ||| ||||| Sbjct 1894954 GAGAAGAGTTCGAGGCATTGTACGAAAAGT 1894925 >seq19 Length=1505300 Score = 109 bits (120), Expect = 7e-19 Identities = 161/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GC 102168 ||||||||| || | ||||| || |||||||| || | | | ||| ||| | | Sbjct 41731 AGTTCCATGCATCCGCAAGAAGGCCGATTGGGCCAT----TCGATGGATCCAAGATAAGA 41786 Query 102169 GTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 |||| || || |||| || | || ||||| || |||||||| |||||| | Sbjct 41787 ATTCCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCG 41846 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | |||||| | | || | ||||| |||||||| ||||||||||| || ||| ||||| Sbjct 41847 GCTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCT 41906 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| || ||||| |||||||| || || ||| || ||||| Sbjct 41907 CCAACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGC 41952 >seq12 Length=4066456 Score = 86.0 bits (94), Expect = 8e-12 Identities = 216/324 (67%), Gaps = 17/324 (5%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || || | | || || | ||| ||| |||||||||||| | Sbjct 1348556 AATCCATCCATTTCAGTGAGTATTTGATTGAGAGTGCTTTCACGTTCATCATTCCC---- 1348501 Query 16035 ATACCACCA-----GCACTGCG---TTG-CTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||||||| | | | || ||| |||||| | ||||||||| || ||||||||| Sbjct 1348500 --ACCACCAAAGTTGGATTTCGATCTTGACTTTCCGATGGCATCAATTTCGTCAATGAAG 1348443 Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 16145 | ||| ||||| |||| ||||| |||| || || || ||||| | ||| Sbjct 1348442 ATGATACATGGGGTGTTTTTTCGAGCAGTAGCAAATAGGTCGCGAACACGGGAAGGGCCA 1348383 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGA 16204 || ||||| ||||||||||| || | | | || || || | |||||| ||| || Sbjct 1348382 ACGCCAACGAACATCTCCACGAATTCAGAGCCGCTGACGCTGTA-GAAGGGAACAGCGGA 1348324 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 || || ||| | || || || ||||| ||||| ||||||||| || | || | Sbjct 1348323 CTCGCCGGCAGTCGCCTTTGCTAGTAGAGTTTTACCGGTACCTGGCGGCCCAGAAAGAAT 1348264 Query 16265 GGCACCTCGTGGAATCTTGGCGCC 16288 || ||||| || || || || || Sbjct 1348263 AGCTCCTCGAGGTATTTTCGCACC 1348240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742252573680