Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq14 158 1e-33 seq16 105 8e-18 >seq14 Length=2198313 Score = 158 bits (174), Expect = 1e-33 Identities = 407/617 (66%), Gaps = 5/617 (1%) Strand=Plus/Plus Query 110523 GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACA 110582 |||||| |||| || || | |||||| ||||||| | || |||| | || || Sbjct 1894932 GTACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCA 1894991 Query 110583 GAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACAT 110642 ||| |||| ||||| ||| || ||||| | ||||||||||| |||||| |||||| Sbjct 1894992 GAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAA 1895051 Query 110643 CGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAA 110702 ||| |||| || |||||| ||| | ||||| | || ||||| ||| || || | Sbjct 1895052 GGCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAG 1895111 Query 110703 AAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG--- 110759 || || | |||||| | ||||||||| || || |||| ||| | || || ||| Sbjct 1895112 GAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTT 1895171 Query 110760 ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAAT 110819 || |||||| ||||| | || ||| ||||| || | ||||| || | || Sbjct 1895172 GTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGAT 1895231 Query 110820 TCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGAT 110879 ||| | ||| || || || || ||| ||| ||||||| || ||||| Sbjct 1895232 TCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGAC 1895291 Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCAT 110938 | | ||| || || || || ||| ||| ||||| ||| | ||||| | | Sbjct 1895292 GTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCT-TCAGTGTGTCGT 1895350 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 | ||||| || || || |||| || |||| || ||||| |||| ||| || || Sbjct 1895351 AGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCT 1895410 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCT 111058 | || ||||| ||||||||||| || || | ||||| |||| |||||||| Sbjct 1895411 GCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGA 1895470 Query 111059 TGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCA 111118 |||||||| || | | | || || | |||||| ||||| | ||||||||||| Sbjct 1895471 GATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGCA 1895530 Query 111119 TGAACATATATTGAGGC 111135 | | ||||| || ||| Sbjct 1895531 TTATCATATGCTGTGGC 1895547 >seq16 Length=1024933 Score = 105 bits (116), Expect = 8e-18 Identities = 200/291 (69%), Gaps = 9/291 (3%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| ||||| | ||| |||||||||||||||| ||||||| | | | | || | Sbjct 229304 GAAGCCGTCGAGTTCGGTGAGAAGCTGGTTGAGAGTCTGTT-----TGA-CATAGGCTG- 229356 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711 ||| | | | | ||||| || | || |||| ||||||||||| | |||| Sbjct 229357 CAT--CTCGTTCGTTTCGCTTGGCGCCAATGGCATCAAGTTCATCGATGAAGATGATAGC 229414 Query 11712 CGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTAC 11771 ||| |||||||| ||||| | || |||||||| |||||||| ||||||||||| || Sbjct 229415 TGGTGCTTTGGCACGGGCCTGGGCAAACAGTTCACGGACACGCTTAGCTCCAACACCGAC 229474 Query 11772 GAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGC 11831 | | ||||| |||| | | | |||| | | ||||||||| | || ||||| Sbjct 229475 GTATATCTCGTCGAACTCGGAGCCAGACATGTAGAAGAAGGGAACGCCTGCTTCTCCAGC 229534 Query 11832 GATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 | |||| || || ||||| ||||| || || || | ||| ||||||| Sbjct 229535 AACAGCTCTGGCAAGAAGAGTTTTACCGGTTCCGGGAGGTCCAACGAGAAG 229585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975860118200