Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19]
19 sequences; 22,301,977 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq14 150 2e-31
seq19 102 1e-16
seq12 89.7 6e-13
>seq14
Length=2198313
Score = 150 bits (166), Expect = 2e-31
Identities = 685/1068 (64%), Gaps = 26/1068 (2%)
Strand=Plus/Plus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649
|||||||||||||| ||||||||||| || | ||||| | | |||||| | |
Sbjct 1893762 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 1893821
Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709
| ||| ||| || || || || | | || | |||| |||||||||||||
Sbjct 1893822 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 1893881
Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767
|| || | || ||||| | || | | | | | || |||||||||| ||
Sbjct 1893882 GCGCCTCGATCAGCGGCCATCTGAACAATAG--TACGTTGAGAAATTTCCCACACGGTCT 1893939
Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827
||| ||| |||||| || ||||||| | ||||| ||||| || ||||| || |
Sbjct 1893940 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 1893999
Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887
|| || | | ||||||| | |||||| || || | | || || |||| |
Sbjct 1894000 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 1894059
Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTC-TCAGATAGATGTTCG 105944
| ||| |||||||| ||||| || || || | | | || |||||||| |
Sbjct 1894060 GCCATGG--GTTGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAG-TAGATGTTGG 1894116
Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTGTTGGC 106003
||||| ||||||||||| || || | |||||| | || |||| ||| ||||||
Sbjct 1894117 AGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGC 1894175
Query 106004 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA 106063
|| || || | | | ||||||||| | ||| | | ||| | || ||| ||
Sbjct 1894176 ATGGGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCA 1894235
Query 106064 TCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122
|||||||| || | | | || | || |||| ||||||| ||||||| | || ||
Sbjct 1894236 TCCCAGTCCCAGAGGTCGGTCGGCGTTACGTTCC-ACATATCGTATTGAAGGATACCCTG 1894294
Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182
|| ||||||||||| | | || | ||| | | | | || | ||||||
Sbjct 1894295 AGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACACGA 1894354
Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242
|| || | || || || | ||| || ||||| | | |||| |||||||||
Sbjct 1894355 TGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCTTC 1894414
Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCA 106301
|| || || | | || | | | | || |||| || || || || || ||||
Sbjct 1894415 GGGAGAGTCGAAGG-GCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCCA 1894473
Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGTCTCAACGGGATAAAAATT 106359
| |||| || | || || | ||| ||| ||| || ||||| || || ||
Sbjct 1894474 CAGCAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGTT 1894531
Query 106360 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 106419
| |||||||| || ||| | ||| || ||| | || |||| |||||| ||||| |
Sbjct 1894532 CCCGTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGCC 1894591
Query 106420 ATAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAA 106476
| |||| | | |||| | ||| ||| | | |||||||| || || |||||
Sbjct 1894592 AAAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCAA 1894648
Query 106477 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGA 106536
|| ||||| || |||||| | ||||| || | ||||| || || | ||| ||
Sbjct 1894649 GTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTGA 1894708
Query 106537 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAG 106596
||| || || || | |||||||| || |||||| |||||| | ||||||||| ||
Sbjct 1894709 ACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAAG 1894768
Query 106597 CATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644
||| |||| | || ||||||||||| | || |||||| || | |||
Sbjct 1894769 CATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCA 1894816
Score = 118 bits (130), Expect = 1e-21
Identities = 363/556 (65%), Gaps = 13/556 (2%)
Strand=Plus/Plus
Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813
|| ||||| || | ||| | ||| || ||||| ||||||||||| | || ||| ||
Sbjct 1894987 GGGCAGAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTC 1895046
Query 106814 CACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872
|||| || | || ||||| | ||| || | ||||| | || ||||| || |
Sbjct 1895047 CACAAGGCCAAGAATAGATCACGGGCACGGA-CTTCTTCCTTTCCATGGTTCTTGCGGAG 1895105
Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932
||||||||||| | |||||| |||||||||||||| || |||| || | | ||
Sbjct 1895106 GTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACC--- 1895162
Query 106933 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986
| ||||| ||| | || | ||||| | || ||| ||| || || ||||||||
Sbjct 1895163 TGGACGCTTGTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCAT 1895222
Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 107046
|| | || || | || || || || || ||| ||| |||| | |
Sbjct 1895223 GGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGAT 1895282
Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 107106
| |||| || | || || || ||||| |||||| || ||||| | | ||
Sbjct 1895283 ACGGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAG 1895342
Query 107107 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 107166
|| | |||||||| | ||| ||||||||| || | || |||||||| | |||
Sbjct 1895343 TGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCAT 1895402
Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTT 107225
||||| || || || ||||||||||| || || | || || |||| || | |
Sbjct 1895403 TTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTC-T 1895461
Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285
||||||| | |||||| || | || |||| ||| || |||||||| |||| ||
Sbjct 1895462 GGGACATGAGATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGG 1895521
Query 107286 CCACACGCATAAACAT 107301
| || ||||| | |||
Sbjct 1895522 CAACTCGCATTATCAT 1895537
>seq19
Length=1505300
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||| || || || || ||||| || ||||| || |||||| || ||
Sbjct 41953 GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCC 41894
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
||||||||||| |||||||||| ||| | || | | ||| || ||| |||||| ||
Sbjct 41893 GGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAAT 41834
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431
|||||| || ||||| |||| |||||||| |||||
Sbjct 41833 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAA 41795
>seq12
Length=4066456
Score = 89.7 bits (98), Expect = 6e-13
Identities = 194/286 (68%), Gaps = 17/286 (6%)
Strand=Plus/Minus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| |||||||| || || | | ||| || | ||| ||| |||||||||||| |
Sbjct 1348556 AATCCATCCATTTCAGTGAGTATTTGATTGAGAGTGCTTTCACGTTCATCATTCCC---- 1348501
Query 9342 ATACCACCA-----GCACTGCG---TTG-CTTTCCCACGGCATCAATCTCATCAATGAAG 9392
||||||| | | | || ||| |||||| | ||||||||| || |||||||||
Sbjct 1348500 --ACCACCAAAGTTGGATTTCGATCTTGACTTTCCGATGGCATCAATTTCGTCAATGAAG 1348443
Query 9393 ACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCC 9452
| |||||||| |||| || || | |||| || |||||||| | | |||
Sbjct 1348442 ATGATACATGGGGTGTTTTTTCGAGCAGTAGCAAATAGGTCGCGAACACGGGAAGGGCCA 1348383
Query 9453 ACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGA 9511
|| ||||| ||||||||||| || | | | || || || | |||||| ||| ||
Sbjct 1348382 ACGCCAACGAACATCTCCACGAATTCAGAGCCGCTGACGCTGTA-GAAGGGAACAGCGGA 1348324
Query 9512 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557
|| || ||| | || || || ||||| ||||| |||||||||
Sbjct 1348323 CTCGCCGGCAGTCGCCTTTGCTAGTAGAGTTTTACCGGTACCTGGC 1348278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980659879560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |