Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14 150 2e-31 seq19 102 1e-16 seq12 89.7 6e-13 >seq14 Length=2198313 Score = 150 bits (166), Expect = 2e-31 Identities = 685/1068 (64%), Gaps = 26/1068 (2%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 |||||||||||||| ||||||||||| || | ||||| | | |||||| | | Sbjct 1893762 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 1893821 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | ||| ||| || || || || | | || | |||| ||||||||||||| Sbjct 1893822 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 1893881 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767 || || | || ||||| | || | | | | | || |||||||||| || Sbjct 1893882 GCGCCTCGATCAGCGGCCATCTGAACAATAG--TACGTTGAGAAATTTCCCACACGGTCT 1893939 Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827 ||| ||| |||||| || ||||||| | ||||| ||||| || ||||| || | Sbjct 1893940 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 1893999 Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887 || || | | ||||||| | |||||| || || | | || || |||| | Sbjct 1894000 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 1894059 Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTC-TCAGATAGATGTTCG 105944 | ||| |||||||| ||||| || || || | | | || |||||||| | Sbjct 1894060 GCCATGG--GTTGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAG-TAGATGTTGG 1894116 Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTGTTGGC 106003 ||||| ||||||||||| || || | |||||| | || |||| ||| |||||| Sbjct 1894117 AGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGC 1894175 Query 106004 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA 106063 || || || | | | ||||||||| | ||| | | ||| | || ||| || Sbjct 1894176 ATGGGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCA 1894235 Query 106064 TCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 |||||||| || | | | || | || |||| ||||||| ||||||| | || || Sbjct 1894236 TCCCAGTCCCAGAGGTCGGTCGGCGTTACGTTCC-ACATATCGTATTGAAGGATACCCTG 1894294 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182 || ||||||||||| | | || | ||| | | | | || | |||||| Sbjct 1894295 AGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACACGA 1894354 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 || || | || || || | ||| || ||||| | | |||| ||||||||| Sbjct 1894355 TGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCTTC 1894414 Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCA 106301 || || || | | || | | | | || |||| || || || || || |||| Sbjct 1894415 GGGAGAGTCGAAGG-GCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCCA 1894473 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGTCTCAACGGGATAAAAATT 106359 | |||| || | || || | ||| ||| ||| || ||||| || || || Sbjct 1894474 CAGCAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGTT 1894531 Query 106360 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 106419 | |||||||| || ||| | ||| || ||| | || |||| |||||| ||||| | Sbjct 1894532 CCCGTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGCC 1894591 Query 106420 ATAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAA 106476 | |||| | | |||| | ||| ||| | | |||||||| || || ||||| Sbjct 1894592 AAAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCAA 1894648 Query 106477 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGA 106536 || ||||| || |||||| | ||||| || | ||||| || || | ||| || Sbjct 1894649 GTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTGA 1894708 Query 106537 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAG 106596 ||| || || || | |||||||| || |||||| |||||| | ||||||||| || Sbjct 1894709 ACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAAG 1894768 Query 106597 CATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||| |||| | || ||||||||||| | || |||||| || | ||| Sbjct 1894769 CATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCA 1894816 Score = 118 bits (130), Expect = 1e-21 Identities = 363/556 (65%), Gaps = 13/556 (2%) Strand=Plus/Plus Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || ||||| || | ||| | ||| || ||||| ||||||||||| | || ||| || Sbjct 1894987 GGGCAGAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTC 1895046 Query 106814 CACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 |||| || | || ||||| | ||| || | ||||| | || ||||| || | Sbjct 1895047 CACAAGGCCAAGAATAGATCACGGGCACGGA-CTTCTTCCTTTCCATGGTTCTTGCGGAG 1895105 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 ||||||||||| | |||||| |||||||||||||| || |||| || | | || Sbjct 1895106 GTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACC--- 1895162 Query 106933 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986 | ||||| ||| | || | ||||| | || ||| ||| || || |||||||| Sbjct 1895163 TGGACGCTTGTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCAT 1895222 Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 107046 || | || || | || || || || || ||| ||| |||| | | Sbjct 1895223 GGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGAT 1895282 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 107106 | |||| || | || || || ||||| |||||| || ||||| | | || Sbjct 1895283 ACGGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAG 1895342 Query 107107 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 107166 || | |||||||| | ||| ||||||||| || | || |||||||| | ||| Sbjct 1895343 TGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCAT 1895402 Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTT 107225 ||||| || || || ||||||||||| || || | || || |||| || | | Sbjct 1895403 TTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTC-T 1895461 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 ||||||| | |||||| || | || |||| ||| || |||||||| |||| || Sbjct 1895462 GGGACATGAGATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGG 1895521 Query 107286 CCACACGCATAAACAT 107301 | || ||||| | ||| Sbjct 1895522 CAACTCGCATTATCAT 1895537 >seq19 Length=1505300 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| || || || || ||||| || ||||| || |||||| || || Sbjct 41953 GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCC 41894 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||||| ||| | || | | ||| || ||| |||||| || Sbjct 41893 GGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAAT 41834 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 |||||| || ||||| |||| |||||||| ||||| Sbjct 41833 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAA 41795 >seq12 Length=4066456 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/286 (68%), Gaps = 17/286 (6%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || || | | ||| || | ||| ||| |||||||||||| | Sbjct 1348556 AATCCATCCATTTCAGTGAGTATTTGATTGAGAGTGCTTTCACGTTCATCATTCCC---- 1348501 Query 9342 ATACCACCA-----GCACTGCG---TTG-CTTTCCCACGGCATCAATCTCATCAATGAAG 9392 ||||||| | | | || ||| |||||| | ||||||||| || ||||||||| Sbjct 1348500 --ACCACCAAAGTTGGATTTCGATCTTGACTTTCCGATGGCATCAATTTCGTCAATGAAG 1348443 Query 9393 ACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCC 9452 | |||||||| |||| || || | |||| || |||||||| | | ||| Sbjct 1348442 ATGATACATGGGGTGTTTTTTCGAGCAGTAGCAAATAGGTCGCGAACACGGGAAGGGCCA 1348383 Query 9453 ACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGA 9511 || ||||| ||||||||||| || | | | || || || | |||||| ||| || Sbjct 1348382 ACGCCAACGAACATCTCCACGAATTCAGAGCCGCTGACGCTGTA-GAAGGGAACAGCGGA 1348324 Query 9512 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 || || ||| | || || || ||||| ||||| ||||||||| Sbjct 1348323 CTCGCCGGCAGTCGCCTTTGCTAGTAGAGTTTTACCGGTACCTGGC 1348278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980659879560