Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14 179 4e-40 seq19 102 1e-16 >seq14 Length=2198313 Score = 179 bits (198), Expect = 4e-40 Identities = 690/1067 (65%), Gaps = 24/1067 (2%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || |||||| | | |||||||||||||||| || | |||||||||||||||| Sbjct 1894816 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 1894757 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 | || ||| ||||| || |||||||| | || || ||| || ||||| |||||| Sbjct 1894756 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 1894697 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057 || ||||| | || ||||| | |||||| || ||||| || ||||| || || Sbjct 1894696 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 1894637 Query 76058 GCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT---TTTGATTATGAAAAACTTCAT 76114 |||||||| | | ||| ||| | |||| | | |||| || ||||| ||| Sbjct 1894636 GCCCTTCCTACCTTTGTGGATGCTG---TTCGCGGTGAATACGATTTTGGCAAACTCCAT 1894580 Query 76115 GAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCC 76174 ||| |||| || | ||| || ||| | ||| || |||||||| | || || || Sbjct 1894579 GAAGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCG 1894520 Query 76175 GTTGAGACTGCGCGA--AAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232 ||||| || ||| ||| ||| | || || | || |||| | |||| || || | Sbjct 1894519 GTTGAAGAGGCACGACGAAG--CAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGG 1894462 Query 76233 GTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAG 76291 | || || |||| || | | | | || | | || || || ||||||||| Sbjct 1894461 GCCTTGCCGATGCTTTCCTCGCTCTTCGACTGC-CCTTCGACTCTCCCGAAGCCAAGCTT 1894403 Query 76292 ATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTG 76351 |||| | | ||||| || ||| | || || || | || || |||||| | Sbjct 1894402 TTGAACACCCAAATCTTCGAGACCCTTTACCATGCTGCGTTGACCGCATCGTGTGAACTT 1894343 Query 76352 GCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT 76411 || | | | | ||| | || | | ||||||||||| | || || || | ||| Sbjct 1894342 GCCAAGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTCTCAGGGTATCCTT 1894283 Query 76412 CAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAACTACGACTGGGATGTTCTCAAGGA 76470 || | ||||||| |||| || | || | | | || |||||||||| ||| || | Sbjct 1894282 CAATACGATATGT-GGAACGTAACGCCGACCGACCTCTGGGACTGGGATGGTCTTAAAGC 1894224 Query 76471 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 76530 ||| || | ||| | ||||||||| | | | || || |||||||| ||| Sbjct 1894223 TGAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTTGCGCCCATGCCAACTGCCAG 1894164 Query 76531 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACC 76589 |||| || | |||||| | || || ||||||||||| ||||| | ||||||||| Sbjct 1894163 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTACT 1894105 Query 76590 TGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCA 76649 | | || || || ||||| |||||||| || |||| ||||| Sbjct 1894104 CACGCCGTGTACTTGCTGGCGAGTTCCAAGTTGTCAACCCATGGCTTCTCAAAGACCTGG 1894045 Query 76650 AGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCA 76709 | | || || |||||| | ||||||| | | || | | |||||||||| Sbjct 1894044 TCGACCTCGGCCTGTGGTCCGACAATATGAAAAACCGTATCATCGCCGACGGTGGTTCCA 1893985 Query 76710 TTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAA 76769 | ||||| ||||| | ||||||| || |||||| ||| ||| || |||||||||| Sbjct 1893984 TCCAAAACATCTCTAACATCCCAGCAGACATCAAGGCTCTGTACAAGACCGTGTGGGAAA 1893925 Query 76770 --TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAG 76827 || | | | | | || | |||||||| ||||| || ||||||||| || Sbjct 1893924 TTTCTCAACGTA--CTATTGTTCAGATGGCCGCTGATCGAGGCGCCTTCATTGACCAGTC 1893867 Query 76828 TCAAAGTATGAATCTATTCA-TGGAAAG-TCCAACGATGTCCAAGCTCTCTTCTATGCAT 76885 |||| | || || || | ||||| || || ||| ||| || | |||||| Sbjct 1893866 TCAATCCCTCAA--CATCCACTTGAAAGAGCCTACCATGGGAAAGATCACCAGTATGCAC 1893809 Query 76886 ATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 | | ||||| | || ||||| ||||| |||||||||||||| Sbjct 1893808 TTCGCTGGCTGGAAGCTCGGTCTCAAGACCGGCATGTACTATCTCCG 1893762 >seq19 Length=1505300 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| |||||||| |||| ||||| || |||||||| |||||| ||| || ||| Sbjct 41795 TTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTC 41854 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | | || | ||| |||||||||| ||||||||||| || || |||||| || ||| Sbjct 41855 GCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAA 41914 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || ||||| || || || || ||| || |||||| Sbjct 41915 CTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGCC 41953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569458314720