Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19]
19 sequences; 22,301,977 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq14 179 4e-40
seq19 102 1e-16
>seq14
Length=2198313
Score = 179 bits (198), Expect = 4e-40
Identities = 690/1067 (65%), Gaps = 24/1067 (2%)
Strand=Plus/Minus
Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937
||| | || |||||| | | |||||||||||||||| || | ||||||||||||||||
Sbjct 1894816 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 1894757
Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997
| || ||| ||||| || |||||||| | || || ||| || ||||| ||||||
Sbjct 1894756 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 1894697
Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057
|| ||||| | || ||||| | |||||| || ||||| || ||||| || ||
Sbjct 1894696 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 1894637
Query 76058 GCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT---TTTGATTATGAAAAACTTCAT 76114
|||||||| | | ||| ||| | |||| | | |||| || ||||| |||
Sbjct 1894636 GCCCTTCCTACCTTTGTGGATGCTG---TTCGCGGTGAATACGATTTTGGCAAACTCCAT 1894580
Query 76115 GAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCC 76174
||| |||| || | ||| || ||| | ||| || |||||||| | || || ||
Sbjct 1894579 GAAGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCG 1894520
Query 76175 GTTGAGACTGCGCGA--AAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232
||||| || ||| ||| ||| | || || | || |||| | |||| || || |
Sbjct 1894519 GTTGAAGAGGCACGACGAAG--CAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGG 1894462
Query 76233 GTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAG 76291
| || || |||| || | | | | || | | || || || |||||||||
Sbjct 1894461 GCCTTGCCGATGCTTTCCTCGCTCTTCGACTGC-CCTTCGACTCTCCCGAAGCCAAGCTT 1894403
Query 76292 ATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTG 76351
|||| | | ||||| || ||| | || || || | || || |||||| |
Sbjct 1894402 TTGAACACCCAAATCTTCGAGACCCTTTACCATGCTGCGTTGACCGCATCGTGTGAACTT 1894343
Query 76352 GCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT 76411
|| | | | | ||| | || | | ||||||||||| | || || || | |||
Sbjct 1894342 GCCAAGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTCTCAGGGTATCCTT 1894283
Query 76412 CAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAACTACGACTGGGATGTTCTCAAGGA 76470
|| | ||||||| |||| || | || | | | || |||||||||| ||| || |
Sbjct 1894282 CAATACGATATGT-GGAACGTAACGCCGACCGACCTCTGGGACTGGGATGGTCTTAAAGC 1894224
Query 76471 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 76530
||| || | ||| | ||||||||| | | | || || |||||||| |||
Sbjct 1894223 TGAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTTGCGCCCATGCCAACTGCCAG 1894164
Query 76531 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACC 76589
|||| || | |||||| | || || ||||||||||| ||||| | |||||||||
Sbjct 1894163 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTACT 1894105
Query 76590 TGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCA 76649
| | || || || ||||| |||||||| || |||| |||||
Sbjct 1894104 CACGCCGTGTACTTGCTGGCGAGTTCCAAGTTGTCAACCCATGGCTTCTCAAAGACCTGG 1894045
Query 76650 AGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCA 76709
| | || || |||||| | ||||||| | | || | | ||||||||||
Sbjct 1894044 TCGACCTCGGCCTGTGGTCCGACAATATGAAAAACCGTATCATCGCCGACGGTGGTTCCA 1893985
Query 76710 TTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAA 76769
| ||||| ||||| | ||||||| || |||||| ||| ||| || ||||||||||
Sbjct 1893984 TCCAAAACATCTCTAACATCCCAGCAGACATCAAGGCTCTGTACAAGACCGTGTGGGAAA 1893925
Query 76770 --TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAG 76827
|| | | | | | || | |||||||| ||||| || ||||||||| ||
Sbjct 1893924 TTTCTCAACGTA--CTATTGTTCAGATGGCCGCTGATCGAGGCGCCTTCATTGACCAGTC 1893867
Query 76828 TCAAAGTATGAATCTATTCA-TGGAAAG-TCCAACGATGTCCAAGCTCTCTTCTATGCAT 76885
|||| | || || || | ||||| || || ||| ||| || | ||||||
Sbjct 1893866 TCAATCCCTCAA--CATCCACTTGAAAGAGCCTACCATGGGAAAGATCACCAGTATGCAC 1893809
Query 76886 ATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932
| | ||||| | || ||||| ||||| ||||||||||||||
Sbjct 1893808 TTCGCTGGCTGGAAGCTCGGTCTCAAGACCGGCATGTACTATCTCCG 1893762
>seq19
Length=1505300
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
||||| |||||||| |||| ||||| || |||||||| |||||| ||| || |||
Sbjct 41795 TTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTC 41854
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
| | || | ||| |||||||||| ||||||||||| || || |||||| || |||
Sbjct 41855 GCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAA 41914
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || ||||| || || || || ||| || ||||||
Sbjct 41915 CTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGCC 41953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569458314720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |