Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq6 307 1e-78 seq13 159 5e-34 seq18 149 8e-31 seq16 138 1e-27 seq12 104 3e-17 >seq6 Length=1400444 Score = 307 bits (340), Expect = 1e-78 Identities = 573/835 (69%), Gaps = 15/835 (2%) Strand=Plus/Plus Query 196052 AATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCT 196111 ||| || | ||||| || || || | ||||| || || ||||| || || ||||||||| Sbjct 1383544 AATGCTCGTGCTCTCCGCCGTCTCCGCACTGCCTGCGAGCGTGCTAAGCGTACTCTCTCT 1383603 Query 196112 TCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACA 196171 ||| | || || || ||||||||||||| | | ||| || |||||||||| || Sbjct 1383604 TCTGCTGCCCAGACCTCCATTGAGATTGATTCTCTCTATGAGGGTGTTGACTTCTACACC 1383663 Query 196172 ACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAA 196231 | || |||||||| ||||| || ||| | | || | || | |||||| Sbjct 1383664 TCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACTATGGAG 1383723 Query 196232 CCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTC 196291 ||||| || | ||| || |||||||| ||||| || ||||| || | || |||||| Sbjct 1383724 CCTGTCGAGCGAGTCCTCCGTGACGCCAAGATCGACAAGTCCTCCGTCCACGAGATTGTC 1383783 Query 196292 CTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAAT 196351 || || || || || || ||||| || ||||| || ||||| | || ||||||||| Sbjct 1383784 CTCGTCGGTGGTTCTACTCGTATCCCCAAGATCCAGAAGATGGTCTCCGACTTCTTCAAC 1383843 Query 196352 AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTT 196411 || || |||||| | |||||||| |||||||| ||||| || ||||| ||||| Sbjct 1383844 GGCAAGGAGCCAAACAAGTCCATCAACCCCGATGAAGCCGTTGCCTACGGTGCTGCCGTC 1383903 Query 196412 CAGGCTGCTATTCTCTCAGGTGTTGACA-ATAAT-AACGTCCA------AGATCTTCTGC 196463 ||||| || |||||||| || ||||| | | | ||||| ||||| || | Sbjct 1383904 CAGGCCGCCATTCTCTCCGG---TGACACCTCCTCCAAGTCCACCAACGAGATC--CTCC 1383958 Query 196464 TACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAA 196523 | || ||||| || ||| | || || ||| | || || || || ||||| |||||| Sbjct 1383959 TGCTCGATGTCGCTCCCCTCTCTCTCGGTATCGAGACTGCTGGCGGTGTCATGACTCCTC 1384018 Query 196524 TTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTT-TCAACGTATTCC 196582 | || | | ||||| || || || || ||||| | || |||| || || | || Sbjct 1384019 TCATCAAGCGCAACACCACCATCCCTACCAAGAA-GTCTGAGACTTTCTCCACCTTCTCT 1384077 Query 196583 GATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGAT 196642 || || || || ||||| || || || | || || || || |||| | ||||| Sbjct 1384078 GACAACCAGCCTGGTGTCTTGATCCAGGTCTTCGAGGGTGAGCGTGCCCGCACCAAGGAC 1384137 Query 196643 AACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCA 196702 ||| | | || || | ||||| | || || || ||| |||| ||| | |||||||| Sbjct 1384138 AACAACTTGCTCGGCAAGTTCGAGCTCACTGGTATCCCACCTGCCCCCCGTGGTGTTCCT 1384197 Query 196703 CAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGAC 196762 ||||| | || ||||||| | || || || || ||| | |||||| | ||| || Sbjct 1384198 CAGATCGAAGTCACCTTCGATGTTGATGCCAACGGTATTATGAACGTCTCTGCTCTCGAG 1384257 Query 196763 AAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAG 196822 |||| |||| || | | |||||||| || ||||| |||||||| || || || ||| Sbjct 1384258 AAGGGCACTGGAAAGACCAACAAGATTGTCATCACCAACGACAAGGGCCGTCTGTCCAAG 1384317 Query 196823 GAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 ||||| || || |||||| || || || || ||||||| || || ||||||| Sbjct 1384318 GAGGAGATCGAGCGTATGCTTGCTGAGGCCGAGAAGTACAAGGCCGAGGACGAGG 1384372 Score = 300 bits (332), Expect = 2e-76 Identities = 479/685 (70%), Gaps = 7/685 (1%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 ||||||||||| || || || ||||| || || ||| | | | |||| || | || Sbjct 1382730 GGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCCGTGATGACCGCATTGAA 1382789 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || || || |||||||| || ||||| || | ||||||||| ||||| | Sbjct 1382790 ATCATCGCCAACGATCAGGGAAACCGCACCACTCCCTCCTTCGTTGCCTTCACAGACACC 1382849 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || |||||| |||||||||||||||| || ||| || |||||||||||||| || ||| Sbjct 1382850 GAGCGTCTCATTGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCTATCAACACCGTC 1382909 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || || || |||||||| ||||| |||||||| || | ||||| | ||| || Sbjct 1382910 TTCGATGCTAAGCGTCTCATTGGACGCAAGTTCAACGACGCCGAGGTCCAGGCCGACATG 1382969 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCG--GTGTGGCTGATAAGCCTATGATTAATGTTG 195602 ||| ||| | | | ||||| | | | | ||| ||||| || | | || | Sbjct 1382970 AAGCACTTCCCCTTCAAGGTTGT-CGAGAAGAGCGGC----AAGCCCATCGTCCAGGTCG 1383024 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | || | || ||| |||| || || | || || ||||| || || ||||| | | | Sbjct 1383025 AGTTCAAGGGCGAGGAGAAGCAGTTCACCCCTGAGGAAATCTCCTCCATGGTCCTCACCA 1383084 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||| ||||| || || | | | ||| || || || | || || | |||| Sbjct 1383085 AGATGCGTGAGACCGCCGAGGCCTATCTCGGTGGCACCGTCAACAACGCTGTCATCACTG 1383144 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | ||||| ||||||| || || || || || || || |||||||| | | ||||| | Sbjct 1383145 TCCCTGCCTACTTCAACGACTCCCAGCGTCAAGCTACTAAGGACGCCGGTCTCATTGCCG 1383204 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| || | || ||||| || || || || ||||| ||||| || ||||| | Sbjct 1383205 GTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCTATTGCCTACGGTCTCG 1383264 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||||| |||| || || || | ||||| ||||||||||||||||| || | Sbjct 1383265 ACAAGAAGGCCGACGGTGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACCTTCG 1383324 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 ||||||| || || | || |||| ||||| |||||||| ||| | ||||| ||||| | Sbjct 1383325 ATGTCTCCCTCCTGACCATCGAAGAGGGTATCTTCGAAGTCAAGTCCACTGCCGGTGACA 1383384 Query 195963 CTCATCTAGGTGGTGAAGATTTCGA 195987 |||| | |||||||| || || || Sbjct 1383385 CTCACTTGGGTGGTGAGGACTTTGA 1383409 >seq13 Length=2958713 Score = 159 bits (176), Expect = 5e-34 Identities = 329/489 (67%), Gaps = 3/489 (1%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || ||||||| || ||||| |||| ||| ||| Sbjct 2047299 ACTGTCCCAGCCTACTTCAACGACAACCAGAGACAGGCCACCAAGGATGCTGGTGCCATT 2047358 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| ||| ||| | || ||||| || || || || || || ||||| || ||| Sbjct 2047359 GCCGGTCTCAACGTTCTCCGTATCATCAACGAGCCCACTGCTGCCGCCATTGCCTACGGT 2047418 Query 195839 CTGGACAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | ||| ||| | | ||||| | |||| ||||||||||||||| Sbjct 2047419 CTCGGCTCTGGAAAGTCCGAGAAGGAGCGCAATGTCCTCATCTACGATCTCGGTGGTGGT 2047478 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || ||||| || | || ||| | ||| || ||||| ||||| Sbjct 2047479 ACTTTCGATGTCTCCCTCCTCAACATCCAGGGCGGTGTCTTCACCGTCAAGGCCACTGCC 2047538 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015 |||||||| ||||| |||||| | |||||||| | || ||| || || | Sbjct 2047539 GGTGATACCCATCTTGGTGGTCAGGATTTCGACACCAACCTCCTCGACCACTTCAAGAAG 2047598 Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 ||||| || |||| ||||| ||| | || || | | || || || || | || Sbjct 2047599 GAGTTTACCCGCAAGACCAAGAAGGATCTCTCCGGTGACTCCAGAGCCCTCCGAAGACTC 2047658 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAG 196135 | ||||| || || ||||| || || ||||| || | |||| || | || ||| Sbjct 2047659 CGCACTGCTTGCGAGCGTGCTAAGCGTACTCTTTCCAGCGCTACTCAGACTACCGTCGAG 2047718 Query 196136 ATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAA 196195 ||||| || | || ||||| |||||| || | || || ||||| ||||| || Sbjct 2047719 ATTGACTCTCTCTTCGACGGTGAGGACTTCAATGCCCAGATCACTCGTGCTCGTTTCGAG 2047778 Query 196196 GAGTTAAAC 196204 || || ||| Sbjct 2047779 GACTTGAAC 2047787 >seq18 Length=2912371 Score = 149 bits (164), Expect = 8e-31 Identities = 251/357 (70%), Gaps = 5/357 (1%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || | || | ||||| ||| |||||||||||| | || || | | | Sbjct 809026 CCCGAGGAGGTCTCCGCCATGGTTTTGGGTAAGATGAAGGACATCGCCGAGAAGTACCTC 808967 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || | ||||| | |||| || || ||||| || || ||||||| ||| || || Sbjct 808966 GGAGAGACTGTCAGCCATGCTGTCGTCACTGTCCCCGCCTACTTCAATGACAACCAGAGA 808907 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGA 195810 ||||| ||||||||||||| | | || || ||||| ||| ||| | | || | || || Sbjct 808906 CAGGCCACAAAGGACGCTGGTACCATCGCCGGTCTGAAC-GTCATCCGTGTTGTTAACGA 808848 Query 195811 ACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGT 195870 ||||| || || || ||||| || ||||| |||| || ||||| | | || Sbjct 808847 GCCAACTGCCGCAGCTATTGCCTACGGTCTCGACATGACTGGTGACGA-GCGCCAGATC- 808790 Query 195871 ATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGG 195930 || | ||| ||||||||||||||||| || |||||||| || ||| ||||| || Sbjct 808789 ATCG-TCTACGATCTCGGTGGTGGTACTTTCGATGTCTCTCTCCTCTCCATTGACAAGGG 808731 Query 195931 TATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || |||||| |||||||| ||||| | ||||||||||||||||| Sbjct 808730 TGCCTTCGAGGTCTTGGCTACCGCTGGTGACACTCACTTGGGTGGTGAAGATTTCGA 808674 Score = 123 bits (136), Expect = 3e-23 Identities = 197/280 (70%), Gaps = 16/280 (6%) Strand=Plus/Minus Query 195713 GTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCT 195772 || || ||||| ||||||||||||| || || ||||| ||||| || ||||| |||| | Sbjct 1273700 GTCGTCACTGTTCCTGCTTACTTCAACGACTCTCAACGTCAGGCTACCAAGGATGCTGGT 1273641 Query 195773 GCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCT 195832 ||||| ||||| ||| ||| | | |||| || || || || ||||| |||| Sbjct 1273640 CAAATTGCTGGTCTTAACGTTCTCCGTGTCGTCAACGAGCCCACCGCTGCTGCTCTTGCC 1273581 Query 195833 TATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGT-ATTG--ATCTTTGATCTCGGT 195889 || ||||| || ||| | ||||| ||| |||| ||| ||||| ||| Sbjct 1273580 TACGGTCTCGAGAAGGAGCAGGAC---------CGTGTCATTGCTGTCTACGATCTTGGT 1273530 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATT--GAAGGTGGTATATTCGAAGTAAAGG 195947 |||||||| || ||| |||| ||||| | ||| |||| ||| | ||||| || ||| Sbjct 1273529 GGTGGTACTTTCGATATCTCCATTCTCGAGATTCAGAAG--GGTGTGTTCGAGGTCAAGT 1273472 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || || || || ||||| || |||||||||||||| Sbjct 1273471 CCACCAACGGAGACACCCATCTCGGAGGTGAAGATTTCGA 1273432 >seq16 Length=1024933 Score = 138 bits (152), Expect = 1e-27 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || ||||||||||||||||| ||||| ||||| || || ||| |||| || Sbjct 591947 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGACC 591888 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| ||||| || || || ||||| || || || ||||| || ||| Sbjct 591887 AAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGGAAAA 591828 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| || || || || |||||| | || |||||| | || |||||| || || ||| Sbjct 591827 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCAC 591768 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 || || || | || || ||||| ||||| Sbjct 591767 CTCGTCCTTCGTCTCCGTGGTGGCATGCAA 591738 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || ||||||||||| || || || || || Sbjct 591445 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 591386 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| | ||||| || || |||||||| ||||| || || ||| Sbjct 591385 GACACGATAGACAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCAG 591326 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || |||||||| ||||||||||| || || || || || | ||||| ||| Sbjct 591325 CAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAAC 591266 Query 172042 GTTCAAAAGGAG 172053 | || |||||| Sbjct 591265 ATCCAGAAGGAG 591254 Score = 100 bits (110), Expect = 4e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 198564 CTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAA 198623 ||||||| || | || || || |||||||| ||||| || | ||| | || || ||| Sbjct 229585 CTTCTCGTTGGACCTCCCGGAACCGGTAAAACTCTTCTTGCCAGAGCTGTTGCTGGAGAA 229526 Query 198624 TCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTG 198681 | | || ||||| ||| || || || |||||| | |||||| | ||| |||| Sbjct 229525 GCAGGCGTTCCCTTCTTCTACATGTCTG-GCTCCGAGTTCGA-CGAGATATACGTCGGTG 229468 Query 198682 TTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCA 198741 |||| |||||||| ||||| ||||| |||| || || |||| || |||| ||||| Sbjct 229467 TTGGAGCTAAGCGTGTCCGTGAACTGTTTGCCCAGGCCCGTGCCAAAGCACCAGCTATCA 229408 Query 198742 TCTTCATTGATGAGATTGACGCTGTTGG 198769 ||||||| ||||| |||| || |||| Sbjct 229407 TCTTCATCGATGAACTTGATGCCATTGG 229380 >seq12 Length=4066456 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 171954 AGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013 ||| ||||| || ||||| || || ||||| || || || || || || ||||||||||| Sbjct 3513112 AGACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTTGA 3513171 Query 172014 AGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || ||||| || ||||||| ||| |||| |||||||| || || ||||| || || Sbjct 3513172 GGACGGCCGTACTCTTTCTGATTATAACATTCAGAAGGAGTCCACCCTTCACCTCGTGCT 3513231 Query 172074 AAGGCTTCGGGGTGGTG 172090 | || || ||||||| Sbjct 3513232 CCGTCTCCGTGGTGGTG 3513248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862243757680