Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq14 138 1e-26 seq5 136 5e-26 seq19 107 2e-17 >seq14 Length=2198313 Score = 138 bits (152), Expect = 1e-26 Identities = 204/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || | || |||| ||| || || || |||||||| |||| |||||||| Sbjct 1895181 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 1895240 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||| || || | ||||| |||| ||| || | ||| || || || Sbjct 1895241 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 1895300 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || || | ||| || || | || || || || ||||||||||| || || Sbjct 1895301 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 1895360 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| | ||| ||||| || | ||||||| |||| || || Sbjct 1895361 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 1895420 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 ||| |||||||| ||||| | || |||||| | | | | |||||| Sbjct 1895421 GGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATG 1895469 >seq5 Length=114067 Score = 136 bits (150), Expect = 5e-26 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||| ||||||||||||||| | ||||||| |||| |||||| | || || ||| Sbjct 93670 GCTGCCAATTACCTCGACATCAAGGCCTTGCTCGACGTTGGATGCAAGACCGTCGCAAAC 93729 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||||||||||||||||||||| |||||| || ||| Sbjct 93730 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCCAGAACG 93784 >seq19 Length=1505300 Score = 107 bits (118), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| || || || ||| |||||| |||||||||||||| |||| ||||| ||||| Sbjct 42241 GTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAGATATTGTCCAT 42182 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||||| || |||||| ||| | | || || | |||| || | Sbjct 42181 GAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCAACGAGAAGCCT 42122 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 |||||||| ||||| ||||||||||||||||| || |||||||||| || || Sbjct 42121 ATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGCCGAGAAGGGCACA 42062 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || || | ||| ||| ||||| | |||||| ||| || || |||||| Sbjct 42061 GGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGAT 42008 Score = 95.1 bits (104), Expect = 1e-13 Identities = 138/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||| | ||||||| |||| ||| ||||||||||| || |||||| Sbjct 41934 CCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTC 41875 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||| | ||| ||| ||| || || ||||||||||| |||||| Sbjct 41874 TTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAAG 41815 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCCA 869358 | | || |||| || || ||| || | | |||| |||||| || ||||| Sbjct 41814 GCAACAAGGCGCTGTGCGAA--TGTGGAATTCTTATCTTG--GATCCATCGAATGGCCCA 41759 Query 869359 GTCGGCCTTTTT 869370 |||||||| || Sbjct 41758 ATCGGCCTTCTT 41747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137640771023