Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq14 132 8e-25 seq5 127 3e-23 seq19 107 3e-17 seq13 105 1e-16 >seq14 Length=2198313 Score = 132 bits (146), Expect = 8e-25 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| | || |||| ||| || || || |||||||| || | |||||||| Sbjct 1895181 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 1895240 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||| || || | ||||| || | ||| || | ||| || || || Sbjct 1895241 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 1895300 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || || | ||| || || | || || | ||||| || |||||||| || || Sbjct 1895301 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 1895360 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || | ||||||| ||| || || Sbjct 1895361 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 1895420 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||||||| ||||| Sbjct 1895421 GGCATTGAAGAGAGTGGG 1895438 >seq5 Length=114067 Score = 127 bits (140), Expect = 3e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||| ||||||||||||||| || | ||||| | || ||||||||||| || ||| Sbjct 93670 GCTGCCAATTACCTCGACATCAAGGCCTTGCTCGACGTTGGATGCAAGACCGTCGCAAAC 93729 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| |||||||| |||||||||||||| |||||| || ||| Sbjct 93730 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCCAGAACG 93784 >seq19 Length=1505300 Score = 107 bits (118), Expect = 3e-17 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| |||||| |||||||||||||| |||| ||||| ||||| Sbjct 42240 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAGATATTGTCCATG 42181 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025 | ||| ||||||| || |||| ||||| | || |||| ||| || || | Sbjct 42180 AAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCAACG--AGAAGCC 42123 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||||||||||| |||||||||||||||||||| || |||||||||| || || Sbjct 42122 TATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGCCGAGAAGGGCAC 42063 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||| || | ||| | | ||||| | |||||| ||| || || ||||||| Sbjct 42062 AGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGAT 42008 Score = 89.7 bits (98), Expect = 8e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||| | ||||||| ||| ||| ||||||||||| || |||||| Sbjct 41934 CCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTC 41875 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| ||| ||| ||| || || ||||||||||| |||||| Sbjct 41874 TTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAAG 41815 Query 794461 CCGACGAGCCGCTCGGCAAAAGTG 794484 | || || |||| || || ||| Sbjct 41814 GCAACAAGGCGCTGTGCGAATGTG 41791 >seq13 Length=2958713 Score = 105 bits (116), Expect = 1e-16 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| || || ||||| |||||| |||||||||| ||| ||| Sbjct 216774 GTACTTGGTGACGGCCTTGGTGCCTTCAGAGACAGCGTGCTTGGCCAGTTCACCGGGCAG 216833 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||| || || |||| |||||| ||||| | |||| ||| ||| Sbjct 216834 GATGAGACGGACGGAGGTCTGAATCTCTCTGGTGGAGATGGTG 216876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244378883341