Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq16 123 2e-23 seq12 98.7 6e-16 >seq16 Length=1024933 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || || | ||||| ||| |||| || | |||||||||||||| |||||||| || Sbjct 591216 TTACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCG 591275 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || || | || | || || || || ||||| || ||||| || || ||||||||| || Sbjct 591276 GACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGC 591335 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || ||| |||||| |||||| || ||| || Sbjct 591336 GGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCT 591395 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | || || || || ||||| || ||||| || |||||||||||| Sbjct 591396 ACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATG 591446 Score = 113 bits (124), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||||||||||||||| ||||| ||||| || ||| |||| | || Sbjct 591760 AGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 591819 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||| || |||||||| || ||||||||| | || | ||||||||||| Sbjct 591820 TCGAGCTGTTTTCCTGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 591879 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||| ||| || || | ||| || ||| Sbjct 591880 TGGATCTTGGTCTTGACGTTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTC 591939 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 591940 TTGCCGGTGA 591949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||| || ||||| |||||||| ||| | || | || Sbjct 591462 AGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCC 591521 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||| || ||||| || |||||||||||| | || | ||||||||||| Sbjct 591522 TCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 591581 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||| ||||| |||| || |||||| Sbjct 591582 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTC 591641 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || || || || || || Sbjct 591642 TTGCCGGTCAGAGTTTTCAC 591661 >seq12 Length=4066456 Score = 98.7 bits (108), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| |||| |||||||||||||||||| || || || | || | || Sbjct 3513231 AGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGAAAGAGTACGGCCGTCC 3513172 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || ||||| ||||||||||| || ||||||||| | || | ||||||||||| Sbjct 3513171 TCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 3513113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692724581761