Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-15 seq17 95.1 9e-14 >seq6 Length=1400444 Score = 100 bits (110), Expect = 2e-15 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| || ||||| || ||||| ||||| | ||| | || | || | | ||| Sbjct 1383421 ACGAGACGGTTGTCAAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACT 1383362 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || ||||| | | || || | ||||| ||| |||||||| | ||| Sbjct 1383361 TCGAAGATACCCTCTTCGATGGTCAGGAGGGAGACATCGAAGGTACCACCACCGAGATCG 1383302 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || ||| || || || ||||| || |||| ||||||| Sbjct 1383301 AAGATGAGAACGTTGCGCTCACCGTCGGCCTTCTTGTCGAGACCGTAGGCAATAGCAGCA 1383242 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 ||||| || || || || || | | || || ||||| ||||| || || || ||| Sbjct 1383241 GCAGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTA 1383182 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || ||||| | || || ||||| || || ||||| ||||| || || || Sbjct 1383181 GTAGCTTGACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGC 1383132 >seq17 Length=1034021 Score = 95.1 bits (104), Expect = 9e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| |||||||| | ||||||||||| |||||| | ||| | || ||| | |||||| Sbjct 913963 GAATTCTTCTTCCACGCTATGGCTGGTCGCGAAGGTTTGATTGACACTGCTGTCAAAACT 913904 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 || || ||||||||||| || |||| ||||||||| || ||||| Sbjct 913903 GCGGAGACTGGTTATATCCAGCGAAAGCTTGTCAAGGCACTGGAAGA 913857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629467180294