Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq16 152 1e-31 seq12 84.2 4e-11 >seq16 Length=1024933 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| ||| ||||| || || |||| || || ||||| || |||||||| | Sbjct 591217 TACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGG 591276 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || ||||||||||||||||| || | || || ||||| | Sbjct 591277 ACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCG 591336 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||||| || || || || ||||| || | | ||||| Sbjct 591337 GAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTA 591396 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| || || ||||| |||| ||||| || || |||||||| Sbjct 591397 CTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCAT 591445 >seq12 Length=4066456 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| || ||||||||||| ||| | | || Sbjct 3513235 ACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGAAAGAGTACGGCC 3513176 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || |||||||| || ||||| || | || || ||||| || ||||| ||||| Sbjct 3513175 GTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTT 3513116 Query 82715 ATCT 82718 ||| Sbjct 3513115 GTCT 3513112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826960986441