Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14 114 1e-20 >seq14 Length=2198313 Score = 114 bits (126), Expect = 1e-20 Identities = 356/548 (65%), Gaps = 5/548 (1%) Strand=Plus/Plus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGC 147940 |||| || |||||||| || || | ||||| || | |||||| |||||| || | Sbjct 1895120 AGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC 1895179 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 |||||||||||| | | ||||||| ||||| || | |||||| | | ||| | | Sbjct 1895180 CCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGG 1895239 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 | ||||||||| | || | | ||| ||| || | ||| ||||||| | Sbjct 1895240 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGAC 1895299 Query 148061 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119 | || || || || || |||||| || ||| || || ||| |||||| || Sbjct 1895300 CGATTCCTCCAGCAGT-CTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 1895358 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| ||||| | || | | ||| | || || ||| ||||||||| | | ||| Sbjct 1895359 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTT 1895418 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || ||| || |||||| || || || || |||| || ||| | || Sbjct 1895419 CCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTAT 1895478 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299 || ||||| | | || | ||| || ||||| || || | || || ||||| | ||| Sbjct 1895479 GTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATA 1895538 Query 148300 TGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTT 148359 |||||||| ||||| ||||| | |||| | || || ||| |||| || || Sbjct 1895539 TGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTC 1895598 Query 148360 TTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGCATCTAGTGTC 148419 ||| | || || |||| ||| | ||| || | ||||| | || |||| | ||| Sbjct 1895599 TTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCT 1895658 Query 148420 TCAGCATG 148427 |||||||| Sbjct 1895659 TCAGCATG 1895666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611086804840