Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq14 223 5e-53 seq19 93.3 6e-14 >seq14 Length=2198313 Score = 223 bits (246), Expect = 5e-53 Identities = 592/898 (66%), Gaps = 10/898 (1%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| || ||||| | |||||| ||||||||||| ||||| || || | | | | Sbjct 1894942 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 1895001 Query 69577 CACACATCATCATCCTT---AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 || ||| ||| ||| |||||| ||||| || | ||| ||| |||| | || | Sbjct 1895002 CA---ATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAG 1895058 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 || ||||| | || | |||||| ||||| || || || || || ||||| Sbjct 1895059 AATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCA 1895118 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCT 69753 | ||||||| |||||||| || || || || || | | | || || || || || || Sbjct 1895119 AAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCA 1895178 Query 69754 CCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTA 69813 ||||| || | |||||||||||||| || | || | ||||| || | || || || Sbjct 1895179 CCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTG 1895238 Query 69814 GATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGA 69873 || || || ||||||| ||| || ||| | || || ||| | ||| Sbjct 1895239 GAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGA 1895298 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || |||||||| || | || || || | |||||| |||| |||||| || ||||| Sbjct 1895299 CCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 1895358 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || || || || |||||| || || || ||| || |||||| | || ||| Sbjct 1895359 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTT 1895418 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || ||||| || | || ||||| || || ||||| |||| | || | ||||||||| Sbjct 1895419 CCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTAT 1895478 Query 70054 GTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACAT 70112 |||||||| || || | ||| ||| | || || || | || || ||||| | ||| Sbjct 1895479 GTTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCAT 1895537 Query 70113 ATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 |||||| || ||||| | || || || | ||||||||| |||| || || Sbjct 1895538 ATGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGT 1895597 Query 70173 TTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 || || || ||||| | ||| |||||| | ||||| | |||| | || || |||| Sbjct 1895598 CTTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTC 1895657 Query 70233 ATCCTTATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACC 70292 || || ||| | || || ||| | | || || || |||| | | || Sbjct 1895658 TTCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCC 1895717 Query 70293 ATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTA-AATAGtttttttG 70351 || ||||| ||||| |||| | | || || || || || | ||| | || || | Sbjct 1895718 GTTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGG 1895776 Query 70352 TTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 ||| ||||| | || || | |||||||| || || ||||| |||||||| ||||| Sbjct 1895777 TTTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1895834 >seq19 Length=1505300 Score = 93.3 bits (102), Expect = 6e-14 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | |||||| || ||| |||||||| || || | || | |||||| || Sbjct 41964 AACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAG 41905 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || |||||||| ||||| ||||||||||| || ||||| || |||| || || || || Sbjct 41904 AAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCG 41845 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 ||||| || || || || || ||||| |||||||| | || | || | | | || Sbjct 41844 CTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTC 41785 Query 39788 TTA---TGTATCCA-CTTCTGTGCCCAATCAGCTTTCTT 39822 ||| || ||||| | || |||||||| || ||||| Sbjct 41784 TTATCTTGGATCCATCGAATG-GCCCAATCGGCCTTCTT 41747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908636859160