Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 1e-13 >seq12 Length=4066456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 226/343 (66%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA------GGTTC---T 19602 |||||||| || | ||||||||||| || | || || |||||| ||| | | Sbjct 2058183 CACATTATCATTTTTGATGAATTGGATGCTGTTTGCAAACAAAGAGGCAGCGGTGCCGGT 2058124 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| || || || || | ||||||||| ||||| || ||||| | ||||||||| Sbjct 2058123 GGTGGAACGGGTGTTGGCGATAGTGTTGTCAACCAACTTCTATCAAAGCTCGACGGTGTT 2058064 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 |||| || || ||||| | |||| || ||||| || || |||| | || || Sbjct 2058063 GACCAGCTAAACAATATCCTCCTTATAGGAATGACAAACCGAATGGACATGATTGATGAT 2058004 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| || | || || ||||| |||| | | || ||||| | | || |||||| | Sbjct 2058003 GCCCTACTGCGTCCAGGTCGACTGGAGGTCCATATGGAAATATCCCTCCCAGATGAACAT 2057944 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 || || | |||| || || || ||||| | |||||| | || || || | | Sbjct 2057943 GGCCGGGCTCAAATATTGAAAATCCATACCCAGAAAATGCGAGAGAACGACGTTATGGAC 2057884 Query 19843 GACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 || || ||||| | || ||||||| |||||| |||| Sbjct 2057883 CGAGACGTGGATCTCAAGGAGCTTGCAGCACTTACCAAGAACT 2057841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455907964095