Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14 149 8e-31 seq19 98.7 1e-15 >seq14 Length=2198313 Score = 149 bits (164), Expect = 8e-31 Identities = 680/1065 (64%), Gaps = 20/1065 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| ||||||||||| || | ||||| | | |||||| | | Sbjct 1893762 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 1893821 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | ||| ||| || || || || | || ||| | |||| |||||||||||| Sbjct 1893822 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 1893881 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTGC 110540 || || | || ||||| | || | | | || | ||||||||| || || Sbjct 1893882 GCGCCTCGATCAGCGGCCATCTGAACAATAGTACGTTGAGA--AATTTCCCACACGGTCT 1893939 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 || ||| |||||| || ||||||| | ||||| || ||||||||||| || | Sbjct 1893940 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 1893999 Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 | || | | ||||||| | |||||| || || | | ||||| |||| | Sbjct 1894000 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 1894059 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 | |||||||| ||||| || || || | | ||||||||| | | Sbjct 1894060 GCCATGGGTTGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAGTAGATGTTGGAGG 1894119 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTGTTGGCATT 110779 |||| ||||||||||| || || | |||||| | || |||| ||| |||||||| Sbjct 1894120 TGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGCATG 1894178 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 || || | | | ||||||||| | ||| | || ||| | || ||| ||||| Sbjct 1894179 GGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCATCC 1894238 Query 110840 CAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGA 110898 ||||| || | | | || | || |||| |||| || | ||||| | || || || Sbjct 1894239 CAGTCCCAGAGGTCGGTCGGCGTTACGTTCC-ACATATCGTATTGAAGGATACCCTGAGA 1894297 Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 110958 | ||||||||||| ||| || | ||| | | | | || | |||||| || Sbjct 1894298 AACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACACGATGC 1894357 Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018 || | || || || | ||| || ||||| | | |||| ||||||||| Sbjct 1894358 GGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCTTCGGG 1894417 Query 111019 TGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAAC 111077 || || || | | || | | | | || |||| || || || || || |||| | Sbjct 1894418 AGAGTCGAAGG-GCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCCACAG 1894476 Query 111078 CAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGTCTCAACGGGATAAAAATTTCT 111135 |||| || | || || | ||| ||| ||| || ||||| || || || | Sbjct 1894477 CAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGTTCCC 1894534 Query 111136 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 111195 |||||||| || ||| | ||| || ||| | || |||| |||||| ||||| || | Sbjct 1894535 GTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGCCAAA 1894594 Query 111196 ATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 ||| | | |||| | ||| ||| | | |||||||| || || ||||| || Sbjct 1894595 ATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCAAGTT 1894651 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||||| || |||||| | ||||| || | ||||| || || | ||| ||||| Sbjct 1894652 ACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTGAACT 1894711 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || | |||||||| || ||||| |||||| | ||||||||| ||||| Sbjct 1894712 ACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAAGCAT 1894771 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||| | || ||||||||||| | | |||||| || | ||| Sbjct 1894772 AAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCA 1894816 >seq19 Length=1505300 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || || || || ||||| || ||||| || |||||| || || Sbjct 41953 GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCC 41894 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||||| ||| | || | | ||| || ||| |||||| || Sbjct 41893 GGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAAT 41834 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAA 122837 |||||| || ||||| |||| |||||| | ||||| | | | ||| | | | Sbjct 41833 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTCTTATCTTGGAT 41774 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTT 122864 |||| || ||||| | |||||||| Sbjct 41773 CCATCGAATGGCCCAATCGGCCTTCTT 41747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031850842400