Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14 127 3e-24 seq19 122 1e-22 >seq14 Length=2198313 Score = 127 bits (140), Expect = 3e-24 Identities = 679/1069 (64%), Gaps = 28/1069 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| || |||||||| || | ||||| || Sbjct 1893762 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 1893821 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | ||| | ||| || || || | || ||| | ||| || || || |||||| Sbjct 1893822 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 1893881 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCC 118014 || ||||| || ||||| | || || || | | | || |||||||||| ||| Sbjct 1893882 GCGCCTCGATCAGCGGCCATCTGAA-CA-ATAGTACGTTGAGAAATTTCCCACACGGTCT 1893939 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 |||| || ||| || || ||||||| | ||| ||||||||||| ||||| | Sbjct 1893940 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 1893999 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 || || | | ||||||| | ||||| || || | | || || | | | Sbjct 1894000 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 1894059 Query 118135 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATATTGG 118191 | ||| | ||||||| ||||| || || || || | | || ||||| |||| Sbjct 1894060 GCCATGGGT--TGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAG-TAGATGTTGG 1894116 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGC 118250 ||||| || ||||||||||| ||| | |||||| | | ||| || ||| || ||| Sbjct 1894117 AGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGC 1894175 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| || | || | |||||||||| ||| | | || | || ||| | Sbjct 1894176 ATGGGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCA 1894235 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATACCT 118367 |||||||| || || | ||| | | | ||||||||| | || |||||||| Sbjct 1894236 TCCCAGTCCCAG---AGGTCGGTCGGCGTTACGTTCCACATATCGTATTGAAGGATACCC 1894292 Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 118427 || || | || || ||||| | | ||||| || || |||| || | ||| | Sbjct 1894293 TGAGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACAC 1894352 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 || | || || || || | || || || || | | |||| |||||| Sbjct 1894353 GATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCT 1894412 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 ||| || || || | ||||| | || |||| || || || ||||| || Sbjct 1894413 TCGGGAGAGTCGAAGGGCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCC 1894472 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGATAAAAAT 118605 | |||| |||||||| | | ||| |||| || || || || || || | Sbjct 1894473 ACAGCAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGT 1894530 Query 118606 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 118665 ||| || || | || || | ||| || || |||| |||| |||||| || || Sbjct 1894531 TCCCGTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGC 1894590 Query 118666 CGTAATCAAA---ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 118722 | |||| | || |||| | ||| ||| | |||||||||| || || |||| Sbjct 1894591 CAAAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCA 1894647 Query 118723 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTG 118782 ||||| || | |||||| | ||||| || | ||||| ||||| | ||||| Sbjct 1894648 AGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTG 1894707 Query 118783 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 118842 |||| || || || | |||||||||||| |||| ||| || | ||||||||||| Sbjct 1894708 AACTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAA 1894767 Query 118843 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 |||| | || | || |||||||| |||| || |||||| || | ||| Sbjct 1894768 GCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCA 1894816 Score = 127 bits (140), Expect = 3e-24 Identities = 401/617 (65%), Gaps = 11/617 (2%) Strand=Plus/Plus Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 ||||| ||| | || || |||||||| || | | || | | || || |||| || Sbjct 1894925 ACTTTTCGTACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCAT 1894984 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 |||||||| || | ||| | ||| || ||||| ||||||||||| | || || Sbjct 1894985 TAGGGCAGAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAG 1895044 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 |||| | ||| |||| ||||| || || ||||||| | || || || || | Sbjct 1895045 TCCACAAGGCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGA 1895104 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 || | || || | |||||| |||||||| || |||||||| | || | | | ||| Sbjct 1895105 GGTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGG-CACCT 1895163 Query 119179 TACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 |||| ||| |||||| ||||| || |||||| ||| || |||||||||| Sbjct 1895164 G--GACGCTTGTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCA 1895221 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 119292 | || | ||| || | ||| ||| || || || ||| || |||| | || Sbjct 1895222 TGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGA 1895281 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | ||||| || | ||| || || || || |||||| || || || | | | Sbjct 1895282 TACGGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCA 1895341 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 | || ||||||| || ||||| ||| |||| | | |||||||||||| | || Sbjct 1895342 GTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCA 1895401 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCT 119471 |||| ||| || || || || ||||||||||| || | || ||| |||| || | Sbjct 1895402 TTTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTC- 1895460 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 |||||||| | ||| || || | || || ||| || ||||| ||||||| Sbjct 1895461 TGGGACATGAGATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACG 1895520 Query 119532 GAGACCCGCATAAACAT 119548 | || ||||| | ||| Sbjct 1895521 GCAACTCGCATTATCAT 1895537 >seq19 Length=1505300 Score = 122 bits (134), Expect = 1e-22 Identities = 295/443 (67%), Gaps = 8/443 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| ||||||||||||||||| ||||| || | | | |||||| ||||| Sbjct 42240 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAGATATTGTCCATG 42181 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA-AATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | ||| | || | || | |||| ||| || | Sbjct 42180 AAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTA-CCAAGAGCAACGAGAAGCCT 42122 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| |||| || | ||||| |||| ||| ||| Sbjct 42121 ATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGCCGAGAAGGGCACA 42062 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | |||| ||| ||| ||| || ||||| | |||||| | Sbjct 42061 GGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGATGGCCTC 42002 Query 129967 AATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || | | | |||| | || || | || ||| || |||||| || Sbjct 42001 AACAGCACTGGGGTCAGGACGATAGTTGAGGTGAGA---GAACAGAAGGCAGGCAAAATC 41945 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || || |||||||||||||||||||| || |||||| || || |||||||| Sbjct 41944 AGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAG 41885 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||||| |||||| || | || ||||| |||||| || ||||| || Sbjct 41884 ACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGAC 41825 Query 130144 ACACGCGAACGCAAAGAGACGCT 130166 || || |||| || |||| Sbjct 41824 GGCAGCAAAGGCAACAAGGCGCT 41802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435053121640