Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14 152 6e-32 seq19 104 3e-17 seq12 91.5 2e-13 >seq14 Length=2198313 Score = 152 bits (168), Expect = 6e-32 Identities = 470/717 (66%), Gaps = 14/717 (2%) Strand=Plus/Minus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || |||||| || | || || |||||||| | || | ||||||||||| || Sbjct 1894816 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 1894757 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 |||| |||| |||||| ||||||||||| | ||| ||| ||||| || || || Sbjct 1894756 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 1894697 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 105067 || |||||| | |||| || | | ||||||| || || |||||| | || || || Sbjct 1894696 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 1894637 Query 105068 GCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGA 105126 || || || | | ||||||| | | | || || |||| || |||||||| || Sbjct 1894636 GCCCTTCCTACCTTTGTGGATGCTGTTCGCGGTGA-ATACGATTTTGGCAAACTCCATGA 1894578 Query 105127 AGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT 105186 ||| || | || || |||| | |||||| | ||||| | || ||||| || Sbjct 1894577 AGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCGGT 1894518 Query 105187 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCT 105246 ||| || || | ||| | | || || || |||| | | || || ||||| || Sbjct 1894517 TGAAGAGGCACGACGAAGCAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGGGCCT 1894458 Query 105247 CGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA 105306 || |||| ||| | | ||| | | || || || |||||| ||| | || Sbjct 1894457 TGCCGATGCTTTCCTCGCTCTTCGACTGCCCTTCGACTCTCCCGAAGCCAAGCTTTTGAA 1894398 Query 105307 TGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTGGCAG 105365 | | || || |||||| | || || || || |||| || | || | || Sbjct 1894397 CACCCAAATCTTCGAGACCCTTTACCATGCTGC-GTTGACCGCATCGTGTGAACTTGCCA 1894339 Query 105366 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAAT 105425 |||| ||||||||||| ||| ||||||||||| | ||| || || | ||||||| Sbjct 1894338 AGGTCGATGGTCCATACTCCTCCTACGAGGGTTCTCCTGTTTCTCAGGGTATCCTTCAAT 1894279 Query 105426 TTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAA 105481 ||||||| |||| || | |||| | || || |||||||| | ||| || | Sbjct 1894278 ACGATATGT-GGAACGTAACGCCGACCGACCT---CTGGGACTGGGATGGTCTTAAAGCT 1894223 Query 105482 CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCC 105541 ||| || | ||| | ||||||||| | || | || || |||||||| ||| | Sbjct 1894222 GAGATCTCCAAGCACGGTGTCCGTAACAGTTTACTACTTGCGCCCATGCCAACTGCCAGC 1894163 Query 105542 ACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 ||| || | |||||| | || || ||||||||||| ||||| | |||||||| Sbjct 1894162 ACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTA 1894107 Score = 143 bits (158), Expect = 3e-29 Identities = 409/626 (65%), Gaps = 11/626 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||| | ||||| || ||| ||||||| || || || ||| |||| || Sbjct 1895546 CCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTA 1895487 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 104340 | || |||||| | |||||||| | || |||| || || | || || ||||| Sbjct 1895486 ATTGAAACATACAATCTCATGTCCCA-GAAATACTTCACCCATGCCTCTCCCACTCTCTT 1895428 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||||| || || || || |||||| | |||||||| || | || |||||||| Sbjct 1895427 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 1895368 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | || || | | ||||| || |||||| ||||| Sbjct 1895367 CAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGG 1895308 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || | || |||| | | | |||| ||| ||| || || || Sbjct 1895307 AGGAATCGGTCTTAACGTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAA 1895248 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || || | || |||||||| || || ||| ||| || | ||||| Sbjct 1895247 CGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATATGT 1895188 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | || | ||| ||||| | || | | || |||| || ||||||||||| Sbjct 1895187 CGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTTGCTATCTACCTGGAGCCATGGCA 1895131 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| |||||| | ||||||||||| | || ||||| || | || || | || Sbjct 1895130 CGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGC 1895071 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| ||||| |||| || | |||| ||| ||| | ||||||||| ||||||| ||| Sbjct 1895070 CCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAA 1895011 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 |||| ||||| | || || || || | |||| ||||| | | |||| | || || Sbjct 1895010 TGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGA 1894951 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGT 104840 ||||| || || | ||| ||||| Sbjct 1894950 AGAGTTCGAGGCATTGTACGAAAAGT 1894925 >seq19 Length=1505300 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GC 94792 |||||| || || | ||||| || |||||||| || | | | ||| ||| | | Sbjct 41731 AGTTCCATGCATCCGCAAGAAGGCCGATTGGGCCAT----TCGATGGATCCAAGATAAGA 41786 Query 94793 GTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 |||| || || |||| || | || ||||| || |||||||| |||||| | Sbjct 41787 ATTCCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCG 41846 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | |||||| | | || | ||||| |||||||| ||||||||||| || ||| ||||| Sbjct 41847 GCTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCT 41906 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| || ||||| |||||||| || || ||| || ||||| Sbjct 41907 CCAACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGC 41952 >seq12 Length=4066456 Score = 91.5 bits (100), Expect = 2e-13 Identities = 217/324 (67%), Gaps = 17/324 (5%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || || | | ||| || | ||| ||| |||||||||||| | Sbjct 1348556 AATCCATCCATTTCAGTGAGTATTTGATTGAGAGTGCTTTCACGTTCATCATTCCC---- 1348501 Query 9674 ATACCACCA-----GCACTGCG---TTG-CTTTCCCACGGCATCAATCTCATCAATGAAG 9724 ||||||| | | | || ||| |||||| | ||||||||| || ||||||||| Sbjct 1348500 --ACCACCAAAGTTGGATTTCGATCTTGACTTTCCGATGGCATCAATTTCGTCAATGAAG 1348443 Query 9725 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 | ||| ||||| |||| ||||| |||| || || || ||||| | ||| Sbjct 1348442 ATGATACATGGGGTGTTTTTTCGAGCAGTAGCAAATAGGTCGCGAACACGGGAAGGGCCA 1348383 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGA 9843 || ||||| ||||||||||| || | | | || || || | |||||| ||| || Sbjct 1348382 ACGCCAACGAACATCTCCACGAATTCAGAGCCGCTGACGCTGTA-GAAGGGAACAGCGGA 1348324 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 9903 || || ||| | || || || ||||| ||||| ||||||||| || | || | Sbjct 1348323 CTCGCCGGCAGTCGCCTTTGCTAGTAGAGTTTTACCGGTACCTGGCGGCCCAGAAAGAAT 1348264 Query 9904 GGCACCTCGTGGAATCTTGGCGCC 9927 || ||||| || || || || || Sbjct 1348263 AGCTCCTCGAGGTATTTTCGCACC 1348240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260661475560