Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 187 8e-42 seq17 138 3e-27 seq16 120 9e-22 seq12 104 7e-17 >seq6 Length=1400444 Score = 187 bits (206), Expect = 8e-42 Identities = 486/734 (66%), Gaps = 14/734 (2%) Strand=Plus/Plus Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262 |||| |||||||| ||||| || || || || || | | | | | |||| || | | Sbjct 1382728 TAGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCCGTGATGACCGCATTG 1382787 Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322 |||| || || || ||||| || ||| | || || || || | |||||| || || || | Sbjct 1382788 AAATCATCGCCAACGATCAGGGAAACCGCACCACTCCCTCCTTCGTTGCCTTCACAGACA 1382847 Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382 | |||||| | ||||| ||| | ||||| || || | || || || | || || | Sbjct 1382848 CCGAGCGTCTCATTGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCTATCAACACCG 1382907 Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGAC----AAATCTACACAATC 349437 | || ||||||||||| || ||||| | ||||| | ||| | || || | Sbjct 1382908 TCTTCGATGCTAAGCGTCTCATTGGACGCAAGTTCAAC-GACGCCGAGGTC----CAGGC 1382962 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | ||||| | | |||| | | || || || | | Sbjct 1382963 CGACATGAAGCACTTCCCCTTCAAGGTTGT-CGAGAAGA--GCGGCAAGCCCATCGTCCA 1383019 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || | || || || | || || || || || ||||| || || ||||| | Sbjct 1383020 GGTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACCCCTGAGGAAATCTCCTCCATGGTCCT 1383079 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || ||| || | || || || ||| | |||| || || | | ||||| || Sbjct 1383080 CACCAAGATGCGTGAGACCGCCGAGGCCTATCTCGGTGGCACCGTCAACAACGCTGTCAT 1383139 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || ||||| || || || |||||||| || || || || || || ||| Sbjct 1383140 CACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAAGCTACTAAGGACGCCGGTCTCAT 1383199 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | || || || | || || || || ||||||||||| || ||||| || || Sbjct 1383200 TGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCTATTGCCTACGG 1383259 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | ||| || || |||| || || ||| | ||||||||||| Sbjct 1383260 TCTCGACAAGAAGGCCGACGGTGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTAC 1383319 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || || | |||||||| || || ||||| || | ||||| || Sbjct 1383320 CTTCGATGTCTCCCTCCTGACCATCGAAGAGGGTATCTTCGAAGTCAAGTCCACTGCCGG 1383379 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || || ||||| || |||||||| || || || || || Sbjct 1383380 TGACACTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCGTCAACGA 1383439 Query 349918 ATTTAAGCGTCAAG 349931 ||| ||||| |||| Sbjct 1383440 ATTCAAGCG-CAAG 1383452 >seq17 Length=1034021 Score = 138 bits (152), Expect = 3e-27 Identities = 184/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 378191 TAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAG 378250 ||||||| | ||||| | ||| || | ||| ||| ||||||||||| | || Sbjct 913846 TAACCATGACCTCTTCCAGTGCCTTGACAAGCTTTCGCTGGATATAACCAGTCTCCGCAG 913905 Query 378251 TTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAG 378310 |||| || ||||| ||||| ||||| | |||||| |||| || |||||||| ||||| | Sbjct 913906 TTTTGACAGCAGTGTCAATCAAACCTTCGCGACCAGCCATAGCGTGGAAGAAGAATTCGG 913965 Query 378311 TAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCAT 378370 | || || ||||||| | | | || |||| | ||||| | | |||| |||| || Sbjct 913966 TGGGTGTCAGTCCACGGAGATACGAGTTCTCGACGAATCCACGAGATTCTGGAGAATAAT 914025 Query 378371 CATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCAT 378430 ||| |||||| |||| || ||||| |||| | ||| || | ||||| || ||||| | Sbjct 914026 CATCTTTTGTGAAATGTGGCAATGTCCGATATTTAAATCCGAAAGGAATACGCTTTCCTT 914085 Query 378431 CAACATTCTGTTGACC 378446 |||| ||||||||| Sbjct 914086 CAACTGACTGTTGACC 914101 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 378213 TTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAA 378272 ||| ||||||| |||||| |||||||| |||| ||| || || || |||||||| || Sbjct 312677 TTTCATAAGTCTTCGAGACATATAACCTGTTTCTGCAGTCTTCACGGCGGTATCAATCAA 312736 Query 378273 ACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCA 378324 ||| |||| ||| ||| || ||||| | ||||| ||||||||||||||| Sbjct 312737 ACCCTCACGGCCAGACATAGCGTGGAAAAGAAATTCGGTAGGAGTAAGTCCA 312788 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||| | || || |||||||| | ||||| ||| || || | ||||||||||| Sbjct 913086 ATTTCCTTAAGACGAGGCACACCTAGCGTAACGTTC---TTTGAGGACACACCAGCAAAA 913142 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 || ||||| || ||||| | || |||| ||||| ||||||||||| || || | || Sbjct 913143 TGAAAAGTGTTGAGAGTCATCTGGGTAGCCGGCTCTCCAATTGACTGGGCAGCCAACACA 913202 Query 377566 CCAACCATTTCTCCAGGATT 377585 |||||||| || || ||||| Sbjct 913203 CCAACCATCTCACCGGGATT 913222 >seq16 Length=1024933 Score = 120 bits (132), Expect = 9e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || || || |||||||| || | || || || || ||||| |||||||||||||| Sbjct 591254 CTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAA 591313 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| ||||| ||||| || || ||||| ||||| || ||||| || || | || || || Sbjct 591314 GATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 591373 Query 140666 ATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724 || |||| || | ||| ||| ||||| || || | || || || || ||||| || | Sbjct 591374 GTCTATCGTGTC-GCTGGATTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGA 591432 Query 140725 CAAAAATCTGCAT 140737 | || |||||||| Sbjct 591433 CGAAGATCTGCAT 591445 Score = 114 bits (126), Expect = 4e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || ||||| || ||||| || || ||||| || || || || Sbjct 591443 CATGCCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTC 591502 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || |||||||| |||||||| ||||||||||| || || Sbjct 591503 CGAGAGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGG 591562 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||| || || || || ||||| || || | || || || || || | || | ||| || Sbjct 591563 AGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTGGATT 591621 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 | || ||||| || | ||||| ||||| || ||||| || Sbjct 591622 CGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 591661 >seq12 Length=4066456 Score = 104 bits (114), Expect = 7e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| || ||||| || ||||| ||||||||||| Sbjct 3513247 ACCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGA 3513188 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || ||||| |||||||| || ||||| ||||| ||||| || || || Sbjct 3513187 AAGAGTACGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGG 3513128 Query 140630 AATTCCTTCTTTATC 140644 |||||| || || || Sbjct 3513127 AATTCCCTCCTTGTC 3513113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254031130257