Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq14 181 1e-40 seq19 96.9 4e-15 >seq14 Length=2198313 Score = 181 bits (200), Expect = 1e-40 Identities = 400/600 (67%), Gaps = 0/600 (0%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 |||||||| || ||||| ||||| || || ||| | | ||| || |||||| | Sbjct 1895531 ATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTAATTGAAACATACAAT 1895472 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || ||| |||||| | |||||| || || | || || || ||||| ||||| || Sbjct 1895471 CTCATGTCCCAGAAATACTTCACCCATGCCTCTCCCACTCTCTTCAATGCCGGAACCCCG 1895412 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 | ||||| ||| | ||| ||||| | | |||||||| ||||| || || || ||| Sbjct 1895411 CAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGACAGTATCGAAGGTATC 1895352 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || || ||| || || || || ||| | || || ||||| | || Sbjct 1895351 TACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGGAGGAATCGGTCTTAAC 1895292 Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGT 19417 | |||||| | | || | || ||| || ||||| || |||| Sbjct 1895291 GTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGA 1895232 Query 19418 ATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGC 19477 |||||||| ||||| || || ||||||||||| ||||| || ||| ||||||| ||| | Sbjct 1895231 ATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATATGTCGACCAGGGTGGCAAC 1895172 Query 19478 AAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTC 19537 || || || | || || |||||||| |||||||||||||| || || | || ||| Sbjct 1895171 AAGCGTCCAGGTGCCTTTGCTATCTACCTGGAGCCATGGCACGCTGATATCTTTGAGTTC 1895112 Query 19538 CTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCC 19597 || || || ||| |||||| || | || || | || || || || ||| |||| Sbjct 1895111 CTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGCCCGTGATCTATTCTTGGCC 1895052 Query 19598 TTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATG 19657 ||||||| ||| || | |||||| || ||||| ||| | | || ||| ||| | Sbjct 1895051 TTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAATGGCGATTGGACCCTATTC 1894992 Query 19658 TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717 ||||| | || ||||| | | || |||||||| || | |||| | | |||||| Sbjct 1894991 TGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGAAGAGTTCGAGGCATTGTAC 1894932 Score = 179 bits (198), Expect = 4e-40 Identities = 402/602 (67%), Gaps = 4/602 (1%) Strand=Plus/Plus Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 |||||| | | ||| | || || |||||||| | || || || ||| | ||||| Sbjct 1894932 GTACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCA 1894991 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 | ||| ||| || | | ||| ||||| || |||||| | || || |||||| Sbjct 1894992 GAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAA 1895051 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 |||| ||| || || ||| ||| | || || | || |||||| || || || || Sbjct 1895052 GGCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAG 1895111 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 || || | ||| || |||||||| |||||||| ||||| || || | ||| ||||| Sbjct 1895112 GAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTT 1895171 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 | ||| ||||||| ||| || | ||| ||||||||||| || || |||||||| ||||| Sbjct 1895172 GTTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGAT 1895231 Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAG 79644 |||| || | |||||| || || || | ||| | || || || | | || Sbjct 1895232 TCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGA- 1895290 Query 79645 CAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCG 79704 || | ||||| || || | ||| || || || || ||| || || ||| Sbjct 1895291 -CGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCG 1895349 Query 79705 TAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGG 79764 ||||| || ||||| ||| |||||||| | | ||||||||| | ||| || || Sbjct 1895350 TAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGC 1895409 Query 79765 TTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATC 79824 | || ||||| |||||||| || || | || || |||||| | || ||| ||| Sbjct 1895410 TGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATG 1895469 Query 79825 AGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884 |||| ||| || || | || | | ||| || |||||||| ||||| || || ||| Sbjct 1895470 AGATTGTATGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGC 1895529 Query 79885 AT 79886 || Sbjct 1895530 AT 1895531 >seq19 Length=1505300 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 |||| ||||| || || | || ||||| ||| || || || |||||| ||||| | Sbjct 41793 CATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCT 41852 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 || | || |||||||| || |||||||| |||||||| || || | |||||||||| Sbjct 41853 TCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACG 41912 Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | || || ||||| ||||| ||||| || Sbjct 41913 AACTCATCTCCCGTGACGAAGGCCTACA 41940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524669725360