Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 161 1e-34 seq19 93.3 5e-14 seq12 93.3 5e-14 >seq14 Length=2198313 Score = 161 bits (178), Expect = 1e-34 Identities = 402/606 (66%), Gaps = 6/606 (1%) Strand=Plus/Minus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT 53238 ||| ||| || | | ||||| || ||| | |||||||||||||| ||| | || Sbjct 1895547 GCCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGT 1895488 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 ||| || ||| | | ||| ||| || ||||| || || ||| | || || || || Sbjct 1895487 AATTGAAACATACAATCTCATGTCCCAGAAATACTTCACCCATGCCTCTCCCACTCTCTT 1895428 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 ||| || || || || || || ||| | ||||||||| | | |||||||| || Sbjct 1895427 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 1895368 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 | ||||| || |||||||| || || ||| ||||| || || ||| | || Sbjct 1895367 CAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGG 1895308 Query 53419 TGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACG 53476 || |||||| | || || | ||| |||||| | ||| | || || || Sbjct 1895307 AGGAATCGGTCTTAACG--TCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACC 1895250 Query 53477 AACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 |||||| | || | |||||||| || ||||| || || ||||||||||| ||| | || Sbjct 1895249 AACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATAT 1895190 Query 53537 GTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| |||||||||| ||||| | ||| | | || || |||||||| ||||| ||||| Sbjct 1895189 GTCGACCAGGGTGGCAACAAGCGTCCAGGTG-CCTTTGCTATCTACCTGGAGCCATGGCA 1895131 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 ||| || || | ||||| || || || || ||| || || | ||||| | || Sbjct 1895130 CGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGC 1895071 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 |||||| || || || |||||| ||| || | |||||| | || || ||| | Sbjct 1895070 CCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAA 1895011 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGA 53775 | || ||| ||| | ||||| || ||| || || | | ||||||||| || Sbjct 1895010 TGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGA 1894951 Query 53776 GGAGTT 53781 ||||| Sbjct 1894950 AGAGTT 1894945 >seq19 Length=1505300 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| || | | || | ||| || || || | || || ||||| || |||||||| Sbjct 41935 GCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTT 41876 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||||| ||| ||||||| |||||| || |||||||| || || ||||| ||||| Sbjct 41875 CTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAA 41816 Query 74888 GGCGACAAGGCGTTGCGCGAA 74908 ||| |||||||| || ||||| Sbjct 41815 GGCAACAAGGCGCTGTGCGAA 41795 >seq12 Length=4066456 Score = 93.3 bits (102), Expect = 5e-14 Identities = 227/339 (67%), Gaps = 20/339 (6%) Strand=Plus/Plus Query 118016 CCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGT 118075 ||||||||||| ||||| ||||| ||| ||||| ||||||| |||||||||| Sbjct 162601 CCCTTGATATGACTGCCGTCATGATCCTGATCAGTCATAATCATCAAATGGCCGTACCGG 162660 Query 118076 AAATCTC-----TCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAA 118130 | ||| |||| |||| |||| ||| || | || | || ||||| | Sbjct 162661 AGGCCTCGAGTATCAG-----TATATTCCTTTTTATGCTGTAAGCCAATGAAATTTTTGA 162715 Query 118131 GGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCG 118190 ||| | ||| |||| | || | || | || || ||| || ||||||||| | Sbjct 162716 TGTTCTGGATTTCAGCATTCTTCGAGATTTGGTCTACGGAGGCATCTCGAACGTTGAGAA 162775 Query 118191 GCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAAC-GCTCAAGCCGGCA 118249 | || || || |||||||| || ||||| |||| | |||||||| |||| |||||| Sbjct 162776 GTTTTCCTCGAAGTGGAAATACTCCAAAAAGGTCAGGTCCCACAACTGCTC-GGCCGGCC 162834 Query 118250 ATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTG-CG 118308 ||||| | |||| || || ||||| || || | || ||||| || ||| || | Sbjct 162835 ATAGCCAAACCCTTGGCGGAATCACCTTCAGTTAGGATGAGAGTACA----GTGATGTCC 162890 Query 118309 A---TGAGTACCGGCCCAATTAGCATCATCCAGCTTCGG 118344 | | ||| |||||| ||| ||||| |||||||| Sbjct 162891 ATCTTTAGTGCCGGCCTTATTTGCATCTGTAAGCTTCGG 162929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 202/298 (68%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 152770 TTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGA 152829 |||| || ||||||||||| || |||||| ||||| || ||||| ||||||| | Sbjct 162589 TTGATGAGTAAGCCCTTGATATGACTGCCGTCATGATCCTGATCAGTCATAATCATCAAA 162648 Query 152830 CGACCGTAGCGCAGGTCACGTAGTGACCCGTAGA--CCTTTCCATGTTGAAGCCCGAGGA 152887 | ||||| || ||| | || ||| | | ||| | ||||| ||| || | || | || Sbjct 162649 TGGCCGTACCGGAGGCCTCG-AGT-ATCAGTATATTCCTTTTTATGCTGTAAGCCAATGA 162706 Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947 ||||||| ||| | ||| |||| | | | || | || | |||||| |||| Sbjct 162707 AATTTTTGATGTTCTGGATTTCAGCATTCTTCGAGATTTGGTCTACGGAGGCATCTCGAA 162766 Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAAC-GCTC 153006 | ||| | | ||||| || |||||||| || || || || | || ||||| |||| Sbjct 162767 CGTTGAGAAGTTTTCCTCGAAGTGGAAATACTCCAAAAAGGTCAGGTCCCACAACTGCTC 162826 Query 153007 AGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGT 153064 | ||||| ||||| | | || || || ||||| || || | || || ||||||| Sbjct 162827 -GGCCGGCCATAGCCAAACCCTTGGCGGAATCACCTTCAGTTAGGATGAGAGTACAGT 162883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215870036200