Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq16 168 2e-36 seq12 102 2e-16 >seq16 Length=1024933 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||||||||| ||||| || || ||||||||||| || |||| || Sbjct 591449 TCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAGAG 591508 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||||| || || || ||||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 591509 GGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGAT 591568 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| ||||||||||| | ||| ||||| Sbjct 591569 GCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACCTC 591628 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||||| ||||| || || ||||| || || Sbjct 591629 AAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 591661 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||| || |||||||||||||| | || |||| || || || ||||| || || || || Sbjct 591254 CTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAA 591313 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 ||| || || || ||||| || |||| ||||||||||||||||||||| || ||||| Sbjct 591314 GATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 591373 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || || ||||| | ||| || || |||||||| || || ||||| || ||||| || Sbjct 591374 GTCTATCGTGTCGCTGGATTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGAC 591433 Query 211103 AAACACCTGCAT 211114 || | |||||| Sbjct 591434 GAAGATCTGCAT 591445 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||| ||| || |||||||| || || | ||||| | || || Sbjct 591760 AGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 591819 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || ||||| ||||| ||||| || ||||| || || | || ||||||||| Sbjct 591820 TCGAGCTGTTTTCCTGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 591879 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || ||||| | || |||||||| ||||| ||| Sbjct 591880 TGGATCTTGGTCTTGACGTTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTC 591939 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 591940 TTGCCGGTGA 591949 >seq12 Length=4066456 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || || ||||||||||| | ||| || | || || Sbjct 3513231 AGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGAAAGAGTACGGCCGTCC 3513172 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||| || ||||||||||| || || || ||||| || |||| ||| |||||||| Sbjct 3513171 TCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 3513113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151717818935