Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq16 149 6e-31 seq12 105 6e-18 >seq16 Length=1024933 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || | || | ||||| ||||| ||||||||||||||| |||||||| ||||| Sbjct 591219 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 591278 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||| || || || || || || ||||| ||||| | ||| Sbjct 591279 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 591338 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| ||| ||| ||| | | | |||||||| || || || Sbjct 591339 ATACCTTCCTTGTCCTGGATCTTTGTCTT-GACGTTGTCTATCGTGTCGCTGGATTCTAC 591397 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| |||||||| ||||| ||||| ||||||||| Sbjct 591398 TTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATG 591446 Score = 147 bits (162), Expect = 2e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || |||||||||||||| ||||| |||||||| Sbjct 591744 GCCACCACGGAGACGAAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 591803 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| |||||||| || || || || ||||||||||| ||||| | ||| Sbjct 591804 GAGGGTGCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATCAGGCGCTGCTGGTCTGGGGG 591863 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| ||| | | | ||||||||| ||||||| Sbjct 591864 GATGCCCTCCTTGTCCTGGATCTTGGTCTT-GACGTTGTCAATAGTGTCGCTGGACTCCA 591922 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||| | || || || || || || Sbjct 591923 CCTCGAGGGTGATAGTCTTGCCGGT 591947 >seq12 Length=4066456 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||| || || || ||| |||||||||||||||||| || Sbjct 3513250 ACCACCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATC 3513191 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || || || |||| || ||||| || || ||||| ||||| ||||| ||||| | Sbjct 3513190 AGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGG 3513131 Query 41752 GGGAACGCTCTCCTTGTCCAT 41772 ||||| | ||||||||| || Sbjct 3513130 GGGAATTCCCTCCTTGTCTAT 3513110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303890202800