Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq144 154 2e-32
seq210 134 1e-26
seq123 89.7 5e-13
seq104 89.7 5e-13
>seq144
Length=62475
Score = 154 bits (170), Expect = 2e-32
Identities = 310/452 (69%), Gaps = 6/452 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| | || |||||| | | | || | |||| ||||||
Sbjct 14622 AGAAGGCCGATTGGGCCATTCGATGGATCCAAGATAAGAATTCCACATTCGCACAGCGCC 14563
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || ||||| || ||||||||||| | ||||| ||| |||||| |||| || |
Sbjct 14562 TTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 14503
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| || || ||||||||||| || || ||| |||||| ||||||||| | |
Sbjct 14502 GGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCGTG 14443
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC-G 117220
|||| || || || || |||||||| | |||||| || | | || || |
Sbjct 14442 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGTCCTG 14383
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
| | | | || || || ||| |||| || || ||| ||||||||||| ||| |
Sbjct 14382 ACCCCAGTGC-TGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTG 14324
Query 117281 ACCGAAGCGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338
||||| || || || |||| || || || | || ||| || | |||| || ||||
Sbjct 14323 ACCGATGCCCTCCCCTGTGC-CCTTCTCGGCATGAA-TGCTAAGCTCATGTGCCAGTACA 14266
Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398
| |||||||||||||| ||||| || | | || | | ||| |||||||||
Sbjct 14265 TTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAACAAGAAGTTCTACAACACCA 14206
Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTCC 117430
||||||| | ||||| ||| || ||||||
Sbjct 14205 CCAACCCCTTCGACTTCATGGACAATATCTCC 14174
Score = 136 bits (150), Expect = 4e-27
Identities = 201/284 (71%), Gaps = 3/284 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| || || || || || |||||||| | ||| ||| | |||||
Sbjct 15028 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 14969
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752
|| ||||| | ||||||| | | | || ||| | || || ||||||
Sbjct 14968 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 14909
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| ||||||| ||||||||| || |||||||| |||||||| || | || |||
Sbjct 14908 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACGT 14849
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || |||||| | || || || |||||||| ||||| || ||| |||
Sbjct 14848 TTCAGCAACGAAGTCCAGGTGCCGGAAGCTCGATGCTTCTATGGCTTCCAAATCATGATG 14789
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
||||| | ||||| |||| || || |||||||||||| ||
Sbjct 14788 GAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTA 14745
>seq210
Length=1335347
Score = 134 bits (148), Expect = 1e-26
Identities = 144/188 (77%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| || |||||| |||| || || ||| ||||| | | |||| |||||
Sbjct 1130870 TCACTGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACG-TCAAG 1130928
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| |||||||||||| | |||||||| || || |||| ||| ||
Sbjct 1130929 ACCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTCGCAGGA 1130988
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|||||||| || |||| ||||||||| |||||||||||||||||||||| ||| ||
Sbjct 1130989 AAACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTC 1131048
Query 40891 CATCTAGT 40898
|| || ||
Sbjct 1131049 CACCTCGT 1131056
Score = 134 bits (148), Expect = 1e-26
Identities = 153/203 (75%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756
|| |||| ||||| || || ||||| |||||||| | || |||||| ||| ||||| |
Sbjct 1131153 TAGTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCA 1131212
Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815
| | |||| ||||| || || | ||||| ||||||||||| | |||||||||||
Sbjct 1131213 TCGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGT 1131271
Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875
||||||| || || |||||||| || |||| || |||||| ||||||||||||||
Sbjct 1131272 CTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAA 1131331
Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898
||||| | || || || || ||
Sbjct 1131332 AAGGAATCAACTCTCCACCTTGT 1131354
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || ||||||||||| ||||| | || || ||| ||| |
Sbjct 1131374 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 1131433
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| ||| || | ||||| || || || || | |||||
Sbjct 1131434 GACACGATAGACAACG-TCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCA 1131492
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| || || |||||||| || |||| || || || ||| || ||
Sbjct 1131493 GCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAA 1131552
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| |||| ||||| | ||| |||| ||| | |||||
Sbjct 1131553 CATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 1131600
>seq123
Length=229
Score = 89.7 bits (98), Expect = 5e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887
||||| |||||||| || | ||||||||| |||||||||||||||||||||| ||||
Sbjct 3 GGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACT 62
Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || || || |||| ||||||||||
Sbjct 63 CTCCACCTCGTCCTGCGTCTGAGGGGCGG 91
>seq104
Length=3444964
Score = 89.7 bits (98), Expect = 5e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| || ||| | |||||||| || || |||| ||| || |||||||| ||
Sbjct 1585757 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTTGAG 1585698
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||| || || || ||||||||||| ||||||||| |||| || || || |||
Sbjct 1585697 GACGGCCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTG 1585641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217519097360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |