Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq144 154 2e-32 seq210 134 1e-26 seq123 89.7 5e-13 seq104 89.7 5e-13 >seq144 Length=62475 Score = 154 bits (170), Expect = 2e-32 Identities = 310/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| | || |||||| | | | || | |||| |||||| Sbjct 14622 AGAAGGCCGATTGGGCCATTCGATGGATCCAAGATAAGAATTCCACATTCGCACAGCGCC 14563 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || ||||| || ||||||||||| | ||||| ||| |||||| |||| || | Sbjct 14562 TTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 14503 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || ||||||||||| || || ||| |||||| ||||||||| | | Sbjct 14502 GGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCGTG 14443 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC-G 117220 |||| || || || || |||||||| | |||||| || | | || || | Sbjct 14442 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGTCCTG 14383 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 | | | | || || || ||| |||| || || ||| ||||||||||| ||| | Sbjct 14382 ACCCCAGTGC-TGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTG 14324 Query 117281 ACCGAAGCGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338 ||||| || || || |||| || || || | || ||| || | |||| || |||| Sbjct 14323 ACCGATGCCCTCCCCTGTGC-CCTTCTCGGCATGAA-TGCTAAGCTCATGTGCCAGTACA 14266 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 | |||||||||||||| ||||| || | | || | | ||| ||||||||| Sbjct 14265 TTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAACAAGAAGTTCTACAACACCA 14206 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 ||||||| | ||||| ||| || |||||| Sbjct 14205 CCAACCCCTTCGACTTCATGGACAATATCTCC 14174 Score = 136 bits (150), Expect = 4e-27 Identities = 201/284 (71%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || || || || |||||||| | ||| ||| | ||||| Sbjct 15028 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 14969 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| | ||||||| | | | || ||| | || || |||||| Sbjct 14968 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 14909 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| ||||||| ||||||||| || |||||||| |||||||| || | || ||| Sbjct 14908 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACGT 14849 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || |||||| | || || || |||||||| ||||| || ||| ||| Sbjct 14848 TTCAGCAACGAAGTCCAGGTGCCGGAAGCTCGATGCTTCTATGGCTTCCAAATCATGATG 14789 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||| | ||||| |||| || || |||||||||||| || Sbjct 14788 GAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTA 14745 >seq210 Length=1335347 Score = 134 bits (148), Expect = 1e-26 Identities = 144/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| || |||||| |||| || || ||| ||||| | | |||| ||||| Sbjct 1130870 TCACTGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACG-TCAAG 1130928 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||||||| | |||||||| || || |||| ||| || Sbjct 1130929 ACCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTCGCAGGA 1130988 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 |||||||| || |||| ||||||||| |||||||||||||||||||||| ||| || Sbjct 1130989 AAACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTC 1131048 Query 40891 CATCTAGT 40898 || || || Sbjct 1131049 CACCTCGT 1131056 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| ||||| || || ||||| |||||||| | || |||||| ||| ||||| | Sbjct 1131153 TAGTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCA 1131212 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || || | ||||| ||||||||||| | ||||||||||| Sbjct 1131213 TCGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGT 1131271 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 ||||||| || || |||||||| || |||| || |||||| |||||||||||||| Sbjct 1131272 CTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAA 1131331 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 ||||| | || || || || || Sbjct 1131332 AAGGAATCAACTCTCCACCTTGT 1131354 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||||||||| ||||| | || || ||| ||| | Sbjct 1131374 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 1131433 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| ||| || | ||||| || || || || | ||||| Sbjct 1131434 GACACGATAGACAACG-TCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCA 1131492 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || |||||||| || |||| || || || ||| || || Sbjct 1131493 GCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAA 1131552 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| | ||| |||| ||| | ||||| Sbjct 1131553 CATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 1131600 >seq123 Length=229 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| |||||||| || | ||||||||| |||||||||||||||||||||| |||| Sbjct 3 GGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACT 62 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || |||| |||||||||| Sbjct 63 CTCCACCTCGTCCTGCGTCTGAGGGGCGG 91 >seq104 Length=3444964 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || ||| | |||||||| || || |||| ||| || |||||||| || Sbjct 1585757 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTTGAG 1585698 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| || || || ||||||||||| ||||||||| |||| || || || ||| Sbjct 1585697 GACGGCCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTG 1585641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217519097360