Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq210 114 1e-20
seq104 87.8 2e-12
>seq210
Length=1335347
Score = 114 bits (126), Expect = 1e-20
Identities = 144/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || || || ||||| |||||||| || | || || |||||||||||
Sbjct 1131349 GTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGCTG 1131290
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTT 118653
|||||| || |||||||||| ||||| || ||||| |||||||||||||| || | |
Sbjct 1131289 TTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGA--TC 1131232
Query 118654 TTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712
|| || || || | |||| |||||| || |||||||| | || | || ||||||
Sbjct 1131231 TTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTGCCG 1131172
Query 118713 GTCAGAGTTTTTAC 118726
||||||||||| ||
Sbjct 1131171 GTCAGAGTTTTCAC 1131158
Score = 107 bits (118), Expect = 2e-18
Identities = 167/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || || | || |||||| || | || ||| || || ||||| ||||||
Sbjct 1131602 TACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGG 1131543
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| || || ||||| |||||||||||||| |||||||||||||||| || || |
Sbjct 1131542 ACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCG 1131483
Query 118630 GTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTC 118687
| || || ||||||| ||| | | ||||| || || | || | ||||| || ||
Sbjct 1131482 GAATACCTTCCTTGTCCTGGA--TCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTC 1131425
Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
|| || | || | |||||||| ||||| || || || || ||||||||| ||
Sbjct 1131424 TACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATGCCT 1131370
Score = 89.7 bits (98), Expect = 4e-13
Identities = 124/170 (73%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606
||| || || |||||||| ||| | ||||| ||||||||||||||||| ||| |
Sbjct 1131039 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCTGCGAA 1130980
Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACC 118664
||| || |||||||| || || || ||||||||||||| ||| | | || || || ||
Sbjct 1130979 GATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGA--TCTTGGTCTTGACG 1130922
Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
| || | ||||| || ||| ||||||| ||| | || ||||| ||
Sbjct 1130921 TTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTCTTGCCAGT 1130872
>seq104
Length=3444964
Score = 87.8 bits (96), Expect = 2e-12
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||| | || ||||| || ||||||||||| || | ||| || |||||
Sbjct 1585641 CACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGGCCGTCCTC 1585700
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646
||||||||||| ||| |||| ||||||||||| || || || || ||||||||||||
Sbjct 1585701 AAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 1585758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433829020012612
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |