Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq241 215 5e-51 seq144 143 2e-29 seq210 113 4e-20 >seq241 Length=1026449 Score = 215 bits (238), Expect = 5e-51 Identities = 434/641 (68%), Gaps = 6/641 (1%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 |||||||| || |||| || | ||| || |||| | || |||| || || ||||| Sbjct 699732 TTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAATAGATCACGGGCA 699791 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || || || || || || |||||| | || | || || || | || || ||| Sbjct 699792 CGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGC 699851 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| ||||| | ||||| || || || | ||| ||||| ||||| ||||| || Sbjct 699852 CATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAT 699911 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 | ||| ||||||||| |||| | ||||| || |||| |||||||| | |||| Sbjct 699912 CTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTT 699971 Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638 || || | || || | || || | ||| |||| | ||| || ||||| | Sbjct 699972 CCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACCGATTCCTCCAGCA 700031 Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698 | || || |||| || || ||||| ||||||||||| || ||||| |||||||| Sbjct 700032 GTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCC 700091 Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758 || | | | | ||| || |||| |||||||| | || || |||| ||| || Sbjct 700092 TTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGA 700151 Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || || ||| || || |||||| | ||||| |||||||| || || || | Sbjct 700152 GTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTC 700211 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TC- 23875 |||| |||||| ||||| ||||||| ||| || ||||| ||||| | || || | || Sbjct 700212 TCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATGCTGTGGCCGTTCA 700271 Query 23876 TCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935 | ||| | |||||| || | ||| ||||| | || | ||| || || || ||| Sbjct 700272 GCAACCTT---GCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAA 700328 Query 23936 TAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || | |||||||||||||| |||| ||| || ||||| || Sbjct 700329 TACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 700369 Score = 149 bits (164), Expect = 6e-31 Identities = 361/535 (67%), Gaps = 15/535 (3%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || ||||| |||||||| ||||| ||||| | |||||| | || || || Sbjct 698475 TGGTACGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATAC 698534 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 || | ||||| | ||| | || || | |||| || ||| ||| || | Sbjct 698535 TGGTGATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAA 698594 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAAT-GTACGCATCGACATTTCCCATACG 22321 | || || |||||||| |||||||| | | |||| ||||| || |||||||| ||| Sbjct 698595 TGAAGGCGCCTCGATCAGCGGCCATCTGAA-CAATAGTACGTTGAGAAATTTCCCACACG 698653 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA 22381 ||||||||||| | |||| ||| || || ||| | |||| ||| || Sbjct 698654 GTCTTGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCG 698713 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| ||||| || | ||| ||||| |||| | || || |||||| Sbjct 698714 TCGGCGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTG 698773 Query 22442 ACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATG 22498 | || ||| |||| || ||||| |||||||| | |||| || |||||| ||| ||| Sbjct 698774 AGAAGCCATG--GGTTGACAACTTGGAACTCGCCAG-CAAGTACACGGCGTGAGTAGATG 698830 Query 22499 TTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTC 22558 ||||| ||| | ||||| || | || ||| || || |||||| ||| || || Sbjct 698831 TTGGAGGTGTAAGGTTCAAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTT 698890 Query 22559 GGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCT-TGA 22616 ||||| ||||| | |||| ||| | | |||||||| || || | | || | || Sbjct 698891 GGCATGGGCGCAAGTAGTAAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGA 698950 Query 22617 GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 |||| ||||||||| || |||| |||||| || || ||||||||||||||| Sbjct 698951 CCATC--CCAGTCCCAGAGGTCGGTCGGCGTTAC---GTTCCACATATCGTATTG 699000 >seq144 Length=62475 Score = 143 bits (158), Expect = 2e-29 Identities = 335/500 (67%), Gaps = 14/500 (3%) Strand=Plus/Minus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| ||||| || | || | || || || |||||||| ||||| ||||| ||| Sbjct 14580 CCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCT 14521 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||| || | || || ||| ||||||| || || || |||||||| || || || || Sbjct 14520 CCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCA 14461 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 |||| | || || || ||||| || || || ||||||||||| ||||| ||| ||||| Sbjct 14460 ACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTC 14401 Query 58138 ACATTGTCAATAAACC-GACGCGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCG 58194 || | | || || ||| | | | | || || ||| ||||| || || ||| Sbjct 14400 ACCTCAACTATCGTCCTGACCCCAGTGC---TGTTGAGGCCATCATCACTGAAGCAGTCA 14344 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 | ||||| | ||||| | ||||| ||||| || ||| | ||||| ||||| | Sbjct 14343 CCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTA 14284 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT----TTGCTCGAACTGATT 58310 | | |||| ||||||||||||| || ||||| || ||| |||||| | | Sbjct 14283 AGCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAA-- 14226 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 ||| || |||||||| | || || || || || ||| | ||||| |||| Sbjct 14225 CAAGAAGTTC--TACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCT 14168 Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 |||||||| ||||| ||||| || ||| | || || || ||| || || ||| | Sbjct 14167 GGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAGAAAGCTGGTGTCATGGCC 14108 Query 58431 GGTAACAAGTTGGAGGACGA 58450 ||| |||| ||| || || Sbjct 14107 AGTACCAAGAAGGAAGAGGA 14088 Score = 114 bits (126), Expect = 1e-20 Identities = 205/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| || || ||||| || || ||||| | |||||| | ||||| Sbjct 15028 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 14969 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||||||| | ||| ||| | | ||||| || ||| || || || Sbjct 14968 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 14909 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || |||||||| || ||||| || ||||||||||| | | ||| | Sbjct 14908 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACG- 14850 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||| ||||| || ||| |||| || ||||||| || || || ||| | | Sbjct 14849 -TTTCAGCAACGAAGTCCAGGTGCCGGAAGCTCGATGCTTCTATGGCTTCCAAATCATGA 14791 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | || || | || || |||| || || || |||||||| || || | ||||| Sbjct 14790 TGGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTATATCAAGGA 14736 >seq210 Length=1335347 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| |||||||| ||||| | || || ||| | Sbjct 1131373 CATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAG 1131432 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| | || | ||||| ||| ||| | |||||||||||| | ||||| |||| Sbjct 1131433 CGACACGATAGACAACGTCAAGACAAAGA-TCCAGGACAAGGAAGGTATTCCGCCAGACC 1131491 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || ||||| |||||| | || ||| ||| || |||||||| Sbjct 1131492 AGCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATA 1131551 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || || || | ||| |||| || | || | ||||||| Sbjct 1131552 ACATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGGTA 1131602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764945687120