Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq241 215 5e-51
seq144 143 2e-29
seq210 113 4e-20
>seq241
Length=1026449
Score = 215 bits (238), Expect = 5e-51
Identities = 434/641 (68%), Gaps = 6/641 (1%)
Strand=Plus/Plus
Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398
|||||||| || |||| || | ||| || |||| | || |||| || || |||||
Sbjct 699732 TTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAATAGATCACGGGCA 699791
Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458
|| || || || || || |||||| | || | || || || | || || |||
Sbjct 699792 CGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGC 699851
Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518
|| ||||| ||||| | ||||| || || || | ||| ||||| ||||| ||||| ||
Sbjct 699852 CATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAT 699911
Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578
| ||| ||||||||| |||| | ||||| || |||| |||||||| | ||||
Sbjct 699912 CTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTT 699971
Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638
|| || | || || | || || | ||| |||| | ||| || ||||| |
Sbjct 699972 CCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACCGATTCCTCCAGCA 700031
Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698
| || || |||| || || ||||| ||||||||||| || ||||| ||||||||
Sbjct 700032 GTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCC 700091
Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758
|| | | | | ||| || |||| |||||||| | || || |||| ||| ||
Sbjct 700092 TTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGA 700151
Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818
|| || ||| || || |||||| | ||||| |||||||| || || || |
Sbjct 700152 GTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTC 700211
Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TC- 23875
|||| |||||| ||||| ||||||| ||| || ||||| ||||| | || || | ||
Sbjct 700212 TCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATGCTGTGGCCGTTCA 700271
Query 23876 TCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935
| ||| | |||||| || | ||| ||||| | || | ||| || || || |||
Sbjct 700272 GCAACCTT---GCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAA 700328
Query 23936 TAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|| | |||||||||||||| |||| ||| || ||||| ||
Sbjct 700329 TACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 700369
Score = 149 bits (164), Expect = 6e-31
Identities = 361/535 (67%), Gaps = 15/535 (3%)
Strand=Plus/Plus
Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202
|||| || ||||| |||||||| ||||| ||||| | |||||| | || || ||
Sbjct 698475 TGGTACGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATAC 698534
Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262
|| | ||||| | ||| | || || | |||| || ||| ||| || |
Sbjct 698535 TGGTGATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAA 698594
Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAAT-GTACGCATCGACATTTCCCATACG 22321
| || || |||||||| |||||||| | | |||| ||||| || |||||||| |||
Sbjct 698595 TGAAGGCGCCTCGATCAGCGGCCATCTGAA-CAATAGTACGTTGAGAAATTTCCCACACG 698653
Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA 22381
||||||||||| | |||| ||| || || ||| | |||| ||| ||
Sbjct 698654 GTCTTGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCG 698713
Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441
| | ||||| ||||| || | ||| ||||| |||| | || || ||||||
Sbjct 698714 TCGGCGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTG 698773
Query 22442 ACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATG 22498
| || ||| |||| || ||||| |||||||| | |||| || |||||| ||| |||
Sbjct 698774 AGAAGCCATG--GGTTGACAACTTGGAACTCGCCAG-CAAGTACACGGCGTGAGTAGATG 698830
Query 22499 TTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTC 22558
||||| ||| | ||||| || | || ||| || || |||||| ||| || ||
Sbjct 698831 TTGGAGGTGTAAGGTTCAAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTT 698890
Query 22559 GGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCT-TGA 22616
||||| ||||| | |||| ||| | | |||||||| || || | | || | ||
Sbjct 698891 GGCATGGGCGCAAGTAGTAAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGA 698950
Query 22617 GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671
|||| ||||||||| || |||| |||||| || || |||||||||||||||
Sbjct 698951 CCATC--CCAGTCCCAGAGGTCGGTCGGCGTTAC---GTTCCACATATCGTATTG 699000
>seq144
Length=62475
Score = 143 bits (158), Expect = 2e-29
Identities = 335/500 (67%), Gaps = 14/500 (3%)
Strand=Plus/Minus
Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017
|||| ||||| || | || | || || || |||||||| ||||| ||||| |||
Sbjct 14580 CCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCT 14521
Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077
||| || | || || ||| ||||||| || || || |||||||| || || || ||
Sbjct 14520 CCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCA 14461
Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137
|||| | || || || ||||| || || || ||||||||||| ||||| ||| |||||
Sbjct 14460 ACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTC 14401
Query 58138 ACATTGTCAATAAACC-GACGCGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCG 58194
|| | | || || ||| | | | | || || ||| ||||| || || |||
Sbjct 14400 ACCTCAACTATCGTCCTGACCCCAGTGC---TGTTGAGGCCATCATCACTGAAGCAGTCA 14344
Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254
| ||||| | ||||| | ||||| ||||| || ||| | ||||| ||||| |
Sbjct 14343 CCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTA 14284
Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT----TTGCTCGAACTGATT 58310
| | |||| ||||||||||||| || ||||| || ||| |||||| | |
Sbjct 14283 AGCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAA-- 14226
Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370
||| || |||||||| | || || || || || ||| | ||||| ||||
Sbjct 14225 CAAGAAGTTC--TACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCT 14168
Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430
|||||||| ||||| ||||| || ||| | || || || ||| || || ||| |
Sbjct 14167 GGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAGAAAGCTGGTGTCATGGCC 14108
Query 58431 GGTAACAAGTTGGAGGACGA 58450
||| |||| ||| || ||
Sbjct 14107 AGTACCAAGAAGGAAGAGGA 14088
Score = 114 bits (126), Expect = 1e-20
Identities = 205/295 (69%), Gaps = 7/295 (2%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| || || ||||| || || ||||| | |||||| | |||||
Sbjct 15028 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 14969
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
||||||||| | ||| ||| | | ||||| || ||| || || ||
Sbjct 14968 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 14909
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| ||||| || |||||||| || ||||| || ||||||||||| | | ||| |
Sbjct 14908 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACG- 14850
Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
||||| ||| ||||| || ||| |||| || ||||||| || || || ||| | |
Sbjct 14849 -TTTCAGCAACGAAGTCCAGGTGCCGGAAGCTCGATGCTTCTATGGCTTCCAAATCATGA 14791
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
| || || | || || |||| || || || |||||||| || || | |||||
Sbjct 14790 TGGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTATATCAAGGA 14736
>seq210
Length=1335347
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| ||||| |||||||| ||||| | || || ||| |
Sbjct 1131373 CATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAG 1131432
Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
||||| | || | ||||| ||| ||| | |||||||||||| | ||||| ||||
Sbjct 1131433 CGACACGATAGACAACGTCAAGACAAAGA-TCCAGGACAAGGAAGGTATTCCGCCAGACC 1131491
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
|||||||||| || || ||||| |||||| | || ||| ||| || ||||||||
Sbjct 1131492 AGCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATA 1131551
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||| || || || || | ||| |||| || | || | |||||||
Sbjct 1131552 ACATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGGTA 1131602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764945687120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |