Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq241 201 1e-46 seq144 102 1e-16 >seq241 Length=1026449 Score = 201 bits (222), Expect = 1e-46 Identities = 590/904 (65%), Gaps = 4/904 (0%) Strand=Plus/Plus Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239 |||||| |||||||| ||||| | |||| |||||| |||| |||| || || Sbjct 699651 TACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAG 699710 Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299 | | | ||| || || | | | ||||| ||||| || | ||||||| |||| | Sbjct 699711 AATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAG 699770 Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 || | |||||||| | | | ||| || ||||| ||||| || || ||| Sbjct 699771 GCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGG 699830 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 ||| | | ||||||| ||||| || |||| ||| || || | | || || || ||| Sbjct 699831 AACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTG 699890 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || ||||| || | ||||| || ||||| || | || | | ||| || | || Sbjct 699891 TTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATT 699950 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 ||||| || || ||||| || | || ||| ||| ||||||| ||| | Sbjct 699951 CCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACG 700010 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 ||||| ||||| || || | || || || || || || || | ||||| ||| Sbjct 700011 TTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAG 700070 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 || ||||| || || || || |||||| || || || ||| || |||||| | | Sbjct 700071 ATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGC 700130 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | ||||| ||||| || | || ||||| || || || || |||| | || | ||| Sbjct 700131 GGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGA 700190 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 63778 ||||| || ||||| || || | ||| || | || || || || || || ||||| Sbjct 700191 TTGTATGTTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCAT 700249 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 || ||| ||||| || | |||| ||| ||| ||| || | || ||| || |||| Sbjct 700250 TATCATATGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTC 700309 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 | || || || || ||||| | ||| |||||| || ||||| | |||| |||| || Sbjct 700310 AAGCGTCTTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 700369 Query 63899 GAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATG 63958 ||| | || || ||| | || || ||| || | || || || |||| | Sbjct 700370 GAGTTCTTCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGG 700429 Query 63959 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtt 64017 || || ||||| ||||| |||| | | || || || || || | ||| | | Sbjct 700430 CCGGCCGTTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAACGG-ACGAGAATTGCT 700488 Query 64018 tttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64077 | || |||| ||||| || || || | |||||||| || || ||||||||||| || | Sbjct 700489 TCTTGGTTTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTG 700548 Query 64078 GATG 64081 |||| Sbjct 700549 GATG 700552 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/282 (67%), Gaps = 5/282 (2%) Strand=Plus/Plus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | ||||||||| || ||||| || || | | ||||| ||||||||||| Sbjct 698435 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 698494 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACT 62152 || || || |||||||| |||| || || |||||||| || | ||| || | Sbjct 698495 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 698553 Query 62153 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62212 || ||| | ||||| || | |||||| || || |||||||| || | || || Sbjct 698554 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 698613 Query 62213 AGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62272 ||||| | | || || ||| | ||||||||| | || || || | ||| || Sbjct 698614 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 698673 Query 62273 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATC 62311 ||| |||| | ||| | | || || ||||| ||||| || Sbjct 698674 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTC 698715 >seq144 Length=62475 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| ||| || || ||||| | || | |||||| || || |||||| Sbjct 14415 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 14474 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || |||||||| || ||||| || ||||| ||||| || ||| ||||| Sbjct 14475 CCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 14534 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || || || || ||||||||||||| ||| Sbjct 14535 ATACCCTCGACGGCAGCAAAGGCAACAAG 14563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815545220080