Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq241 210 3e-49
seq144 104 3e-17
>seq241
Length=1026449
Score = 210 bits (232), Expect = 3e-49
Identities = 589/897 (66%), Gaps = 8/897 (1%)
Strand=Plus/Plus
Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920
|||||||| ||||| | ||||| | ||||||||| || | ||| || | | | |
Sbjct 699660 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 699719
Query 79921 CACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978
|| || |||| || ||| ||||| ||||| || | ||||||| |||| | || | |
Sbjct 699720 CAATCGCCAT--TCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGA 699777
Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038
||||||| | || | || || ||||| ||||| || || |||||| | |
Sbjct 699778 ATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAA 699837
Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098
||||||| ||||| || |||| ||| || || | | || || || ||||| || |
Sbjct 699838 AGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC 699897
Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158
|||| || | ||||| || ||||| || | || | | ||| || | || || ||||
Sbjct 699898 CCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGG 699957
Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218
| | || ||||| || | || ||| ||| ||||||| ||| | ||||
Sbjct 699958 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGAC 700017
Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278
| ||||| || || | || || || || || || || | || || ||||| || |
Sbjct 700018 CGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTT 700077
Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338
| || || || || |||||| || || || ||| || |||||| | | ||||
Sbjct 700078 CGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTC 700137
Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398
| ||||| || | || ||||| || || || || |||| | |||| |||||||| |
Sbjct 700138 CGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATG 700197
Query 80399 TCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATG 80457
| ||||| || || | ||| || | || || || || || || ||||||| |||
Sbjct 700198 TTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATA 700256
Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517
||||| || | |||| | | |||| || || | || ||| || |||| | ||
Sbjct 700257 TGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTC 700316
Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577
|| || || ||||| | ||| |||||| || ||||| | |||| ||||||||||||
Sbjct 700317 TTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCT 700376
Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 80637
|| || ||| | || | ||| || | || || || |||| | ||
Sbjct 700377 TCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCCG 700436
Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGT 80696
|| ||||| ||||| |||| | | || || || || || | ||| | || || ||
Sbjct 700437 TTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGGT 700495
Query 80697 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753
|| ||||| || || || || |||||||| || || | ||||||||| ||||||||
Sbjct 700496 TTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 700552
Score = 93.3 bits (102), Expect = 6e-14
Identities = 197/291 (68%), Gaps = 5/291 (2%)
Strand=Plus/Plus
Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765
|||| ||| | ||||||||| || ||||| || || | | ||||| |||||||||||
Sbjct 698435 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 698494
Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTA-GTTTGGAATAACT 78824
|| || || |||||||| |||| || ||| |||||||| || | ||| || |
Sbjct 698495 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 698553
Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884
|| ||| | ||||| || | |||||| || || |||||||| || | || ||
Sbjct 698554 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 698613
Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 78944
||||| | | || || ||| | ||||||||| | || || || | ||| ||
Sbjct 698614 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 698673
Query 78945 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 78992
||| |||| | ||| | | || || ||||| ||||| || || || ||
Sbjct 698674 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGAT 698724
>seq144
Length=62475
Score = 104 bits (114), Expect = 3e-17
Identities = 151/210 (72%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || ||||| ||| || || ||||| | || ||||||||||| || ||||||
Sbjct 14415 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 14474
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|||||||| || |||||||| || ||||| || ||||| || || || || |||||
Sbjct 14475 CCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 14534
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136
|| || || || || |||||||||||||| | || | | | ||| | || ||
Sbjct 14535 ATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTCTTATCTTGG 14594
Query 50137 ATCCA-CTTTTGAGCCCAATCGGCCTTCTT 50165
||||| | || |||||||||||||||||
Sbjct 14595 ATCCATCGAATG-GCCCAATCGGCCTTCTT 14623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718266456648040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |