Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq241 228 1e-54
seq144 89.7 7e-13
>seq241
Length=1026449
Score = 228 bits (252), Expect = 1e-54
Identities = 593/897 (66%), Gaps = 8/897 (1%)
Strand=Plus/Plus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
|||||||| ||||| | ||| | ||||||||| ||||| || || | | | |
Sbjct 699660 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 699719
Query 72004 CACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061
|| || |||| || ||| ||||| ||||| || | ||||||| |||| | || | |
Sbjct 699720 CAATCGCCAT--TCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGA 699777
Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121
||||||| | || | || || ||||| ||||| || || |||||| | |
Sbjct 699778 ATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAA 699837
Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181
||||||| ||||| || |||| ||| || || | | || || || ||||| || |
Sbjct 699838 AGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC 699897
Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241
|||| || | ||||| || ||||| || | || | | ||| || | || || ||||
Sbjct 699898 CCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGG 699957
Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301
| | || ||||| || | || ||| ||| ||||||| ||| | | ||||
Sbjct 699958 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGAC 700017
Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361
| ||||| || || | || || || || || || || | || || ||||| || |
Sbjct 700018 CGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTT 700077
Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421
| ||||| || ||| |||||| || || || ||| || |||||| | | ||||
Sbjct 700078 CGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTC 700137
Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481
| ||||| || | || ||||| || || || || |||| | |||| |||||||| |
Sbjct 700138 CGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATG 700197
Query 72482 TCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATA 72540
| ||||| || || | ||| || | || || || || || || ||||||| ||||
Sbjct 700198 TTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATA 700256
Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600
||||| || | |||| | | |||| || || | || ||| || |||| | ||
Sbjct 700257 TGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTC 700316
Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660
|| || || ||||| | ||| |||||| || ||||| | |||| |||| |||||||
Sbjct 700317 TTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCT 700376
Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 72720
|| || ||| | || || ||| || | || || || |||| | ||
Sbjct 700377 TCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCCG 700436
Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGT 72779
|| ||||| ||||| |||| | | || || || || || | ||| | || || ||
Sbjct 700437 TTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAACGG-ACGAGAATTGCTTCTTGGT 700495
Query 72780 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
|| ||||| || || || || |||||||| || || ||||||||||| ||||||||
Sbjct 700496 TTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 700552
Score = 87.8 bits (96), Expect = 2e-12
Identities = 203/303 (67%), Gaps = 5/303 (2%)
Strand=Plus/Plus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | ||| || || || |||| || || || | ||||| ||||||||||||
Sbjct 698435 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 698494
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCT 70907
|| || || |||||||| |||| || || |||||||| || | ||| || | |
Sbjct 698495 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 698553
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
||| || | ||| || || | || ||| || || |||||||| || | || ||
Sbjct 698554 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 698613
Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027
||||| | | || || ||| | ||||||||| | || || || | ||| ||
Sbjct 698614 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 698673
Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084
||| |||| | ||| | | || || ||||| ||||| || || || || | |||||
Sbjct 698674 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGATACGGTTTTT 698733
Query 71085 GAT 71087
||
Sbjct 698734 CAT 698736
Score = 84.2 bits (92), Expect = 3e-11
Identities = 131/186 (70%), Gaps = 6/186 (3%)
Strand=Plus/Plus
Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756
||||| ||| |||| |||||||| || ||||||| | ||| |||| | |||||
Sbjct 699352 GGCAATAGAAGCCAAGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTC 699411
Query 71757 AGTGCAAAGATT---ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813
||||||||| || ||||| ||| || || | || | |||||| |||||| |||
Sbjct 699412 AGTGCAAAGGTTTGAACTAC---GGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTT 699468
Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873
|| | |||||| ||||| ||||| || | ||||| || |||| | || | ||| ||
Sbjct 699469 GCAGGAATCCTTGTAAAGCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGC 699528
Query 71874 TTTCCA 71879
| |||
Sbjct 699529 GTACCA 699534
>seq144
Length=62475
Score = 89.7 bits (98), Expect = 7e-13
Identities = 123/169 (73%), Gaps = 5/169 (3%)
Strand=Plus/Plus
Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165
||||||||| || |||||||||||||| || |||||||| || ||||| || || || ||
Sbjct 14456 TTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGC 14515
Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225
|| || || ||||| || || || || || |||||||||| ||| | || | | |
Sbjct 14516 GAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAA 14575
Query 42226 ACCGGCA---CTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTT 42270
|| | | || || ||||| | || |||||||||||||||||
Sbjct 14576 TGTGGAATTCTTATCTTGGATCCATCGAATG-GCCCAATCGGCCTTCTT 14623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671137010408360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |