Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq144 140 5e-28
>seq144
Length=62475
Score = 140 bits (154), Expect = 5e-28
Identities = 338/504 (67%), Gaps = 27/504 (5%)
Strand=Plus/Minus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| || || ||||| | |||| ||||| |||||| | || | || || | | |||
Sbjct 14629 ATCCGCAAGAAGGCCGATTGGGCCATTCGATGGATCCAAGATAAGAATTCCACATTCGCA 14570
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| | || || || || || ||||| ||||| || ||||| || || || ||
Sbjct 14569 CAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCC 14510
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| ||||| |||||||| || |||||||||||||| || | ||||| | ||
Sbjct 14509 ATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATC 14450
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCT-G 125597
|| || ||||| ||||||||| ||| |||||| || ||||| || || || | ||
Sbjct 14449 TCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTAT 14390
Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657
||||| || |||| | || ||| ||||| | || || || || |
Sbjct 14389 CGTCCTGA------CCCCAGTGCTGTTGAGGCCATCA------TCACTGAAGCAGTCACC 14342
Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC-AA 125716
|| || || ||||| | ||||| |||| || | | | |||||||| ||| ||
Sbjct 14341 ATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAA-TGCTAA 14283
Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC 125774
||| |||||| ||||||| ||||| || || ||| | || || |||| ||||
Sbjct 14282 GCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCT-----CGTTGCTCTTGGT 14228
Query 125775 CGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831
||||| | |||||| ||| || ||||| || |||||| || || || || |
Sbjct 14227 AACAAGAAGTTCTACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCT 14168
Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855
|| ||||||||||| |||||||||
Sbjct 14167 GGCAAGACCAACTTCTTCGAGAAG 14144
Score = 109 bits (120), Expect = 8e-19
Identities = 200/284 (70%), Gaps = 8/284 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| || ||| | || || || ||||| | ||||||| | || ||
Sbjct 15028 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 14969
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||| | |||| ||| | | | | | ||| ||| ||| || || ||
Sbjct 14968 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 14909
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||| | ||||||||||| |||| ||| ||||| ||||| ||||| || || |||| |||
Sbjct 14908 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGA-ACG 14850
Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254
||| ||| | | ||| | || || | ||| ||||| || || |||||||||||
Sbjct 14849 TTTC-AGCAA-CGAAGTCCAGGTGCCGGAAG-CTCGATGCTTCTATGGCTTCCAAATCAT 14793
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298
||| ||||| | ||||| |||| |||||| || || ||||
Sbjct 14792 GATGGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACA 14749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741056782294360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |