Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq23 132 8e-27 seq199 102 1e-17 >seq23 Length=699274 Score = 132 bits (146), Expect = 8e-27 Identities = 178/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 563039 GCCAAACGCCATCGCAAGATC-CTCCGCGACAACATCCACGGCATCACCAAGCCTGCCAT 563097 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || |||||||| ||||||||| | || | || |||| | |||| Sbjct 563098 CCGCCGTCTCGCCCGCCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGGCGAGAC 563157 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| || ||| |||| || || || ||| || || Sbjct 563158 CCGCAACGTGCTCAAGTCCTTCCTCGAGGGCGTCATCCGCGACGCCGTCACCTACACTGA 563217 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| |||||||| | || ||||||| || | || || || || Sbjct 563218 ACACGCCAAGCGCAAGACAGTCACCTCTCTCGACGTCGTCTACGCTCTCAAGCGCCAGGG 563277 Query 16672 CCGTA 16676 ||||| Sbjct 563278 CCGTA 563282 >seq199 Length=1802728 Score = 102 bits (112), Expect = 1e-17 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | |||| || || || |||||||| || ||||||||||| || | Sbjct 1371039 CGCCAAGCGTCACCGTAAGATC-CTCCGCGACAACATCCACGGCATCACCAAGCCCGCCA 1370981 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||| ||||| |||||||||||||| ||||||||| |||| Sbjct 1370980 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 1370941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074961365873