Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq210 114 9e-21 seq17 114 9e-21 >seq210 Length=1335347 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| |||| ||| |||| ||||||||| | ||||||||||| || || || ||||| Sbjct 1131603 TTACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCG 1131544 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| || |||| || | |||||||| ||||| || || || || || || | Sbjct 1131543 GACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGC 1131484 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| |||||| || ||| ||| || || | | || || | ||| Sbjct 1131483 GGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCT 1131424 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| | || |||||||| ||||||| || || ||||| ||||||||| Sbjct 1131423 ACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATG 1131373 >seq17 Length=439 Score = 114 bits (126), Expect = 9e-21 Identities = 77/86 (90%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||| ||||| || |||||||| Sbjct 86 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATCGTAGGTAGGGACAGCGGGAATCTCGT 27 Query 25957 TAATCCTTTCATGCGCGTCACTAATT 25982 |||||| ||||||||||||||||||| Sbjct 26 TAATCCATTCATGCGCGTCACTAATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946134553891