Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq210 176 8e-39 seq144 150 3e-31 seq123 125 1e-23 seq199 102 2e-16 >seq210 Length=1335347 Score = 176 bits (194), Expect = 8e-39 Identities = 181/234 (77%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || | |||| ||||| || | |||| ||| || |||||||||||| Sbjct 1131606 TAGTTACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAA 1131547 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 ||||| || |||| || || || | ||| || || || || ||||| | || ||||| Sbjct 1131546 TCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCT 1131487 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-A 68407 || ||||| ||||||||||| || ||||||| ||||||| || || ||||| |||| | Sbjct 1131486 GGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTC-GCTGGA 1131428 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 1131427 TTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCAT 1131374 Score = 134 bits (148), Expect = 3e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| || || || || ||||||||||| || || ||| Sbjct 1131372 CCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAG 1131313 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || || || | ||| || || || || ||||| | ||| ||||| || || Sbjct 1131312 AGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGG 1131253 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| | ||||||| ||||||||||| ||| ||||| || Sbjct 1131252 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTGGATTCGAC 1131194 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 || | |||||||| || || || || || || |||| || Sbjct 1131193 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGACTA 1131153 >seq144 Length=62475 Score = 150 bits (166), Expect = 3e-31 Identities = 321/474 (68%), Gaps = 18/474 (4%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || || |||||||| || || || |||||||||||||| |||||| | Sbjct 14111 CATGACACCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 14170 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG---CGCCAAACTGCTTGGGGTA 10051 |||||| || ||||||||||| |||||||| || | |||| ||| || Sbjct 14171 GAGGGAGATATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTT---GTT 14227 Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111 ||| || || || || | || || |||||||| |||||||||| ||| || | | Sbjct 14228 ACCAAGAGCAACGAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGC 14287 Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171 |||||||| | | | ||||||| ||| ||| | ||| |||| ||| ||| ||| Sbjct 14288 ATTCATGCCGAGAAGGGCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGAC 14347 Query 10172 CGCTTCCTCGACGATG--CTCTTTACCAC----GTCAAGGGACAGCTTGTTCTCGAGCTT 10225 ||||| || |||| ||| | ||| |||| |||| | | ||| ||| | Sbjct 14348 TGCTTCAGTGATGATGGCCTCAACAGCACTGGGGTCA--GGAC-GATAGTT---GAGGTG 14401 Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 || |||| || |||| | ||| ||||| ||||| ||| ||||| ||||| Sbjct 14402 AGAGAACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTT 14461 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 ||| || || ||||||||||| || || || ||||||||| |||| | ||| || Sbjct 14462 GGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGA 14521 Query 10346 CCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA 10399 ||| ||| | || |||||| ||| | |||| || ||||||| |||||| Sbjct 14522 GCCGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAA 14575 >seq123 Length=229 Score = 125 bits (138), Expect = 1e-23 Identities = 112/138 (81%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || || || || ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 229 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 170 Query 68385 ACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443 ||| ||| |||||||| |||| || || |||| ||||||||| || || |||||||| Sbjct 169 ACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGT 111 Query 68444 CTTGACGAATATCTGCAT 68461 |||||| || |||||||| Sbjct 110 CTTGACAAAGATCTGCAT 93 >seq199 Length=1802728 Score = 102 bits (112), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 224961 GGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGT 225020 |||||| || | ||| | |||||||||||||||| | ||||||| |||| ||||||| Sbjct 1638614 GGTCCTCACCGGTGGCGAAACGCCACTGGATGTACTCGGAGGGGGTCTTGTCGAGGTGGT 1638673 Query 225021 TCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCC 225080 | || || ||| ||| || ||||| | ||| || || || ||||| |||| Sbjct 1638674 TATCGATGTGGGCGAAGGCGTGCTGCTTGATGTAGGCAATACGGATGTTCTCGTGCTGGT 1638733 Query 225081 ACACAGAGCCCCGAGT-CGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTG 225139 | || ||| || || || | ||| ||||| ||||| |||| ||| || | |||| Sbjct 1638734 AGACCTCGCCGGTGGTGGGGATGAG-CTCACCGGTCAGGACGTTGACGAGAGTGGACTTG 1638792 Query 225140 CCCGCACCATTGGGGCCAATCACGCCAATCCGGGA 225174 || ||||| |||||||| || ||| | || ||||| Sbjct 1638793 CCGGCACCGTTGGGGCCGATGACGGCGATACGGGA 1638827 Score = 87.8 bits (96), Expect = 3e-12 Identities = 319/494 (65%), Gaps = 19/494 (4%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| || ||||| ||||||| | ||||| || || ||||| || || |||||||| Sbjct 1639164 GAGCCAGGCGACGTTCTTGACGTCGAGATGGTTGGTGGGCTCGTCGAGCAGGAGGATGTC 1639223 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 | | || || ||| || | ||| | |||||||| |||||||| ||||| || || Sbjct 1639224 TGGCTTCTCGAAGACGGCACGGGCGAGGGCGAGCTTCATCTTCCAGCCACCGGAGAGCGA 1639283 Query 225634 GCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTCT---GGAT 225690 | |||| | | ||| | | | |||||| |||| | |||| || |||| Sbjct 1639284 GGCGATGGGGCTCTCGAGCTGCTCACGGACGAAGCCGAACTCGACGAGCTGCTCCTGGAT 1639343 Query 225691 AATGC---GCTCGGGAGAGCTGC-GA----GCGGCAACGTTGGGGTCGGACGAGAGGTAA 225742 | |||||| | | ||| || |||| | || |||| | || | Sbjct 1639344 GGCGGAGAGCTCGGTGGTGATGCCGACATCGCGG--AGCTTCTTCTCGGTCCAGCCG--- 1639398 Query 225743 TCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGG 225802 || |||||| || | | | ||||| | |||||| || ||| | || ||| | Sbjct 1639399 --ATG-ACGGTCTGCTCGGTATCGGCGGCGTCGAGGTCGTGCTCGACGAAGACGGTCTTG 1639455 Query 225803 AGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTA 225862 | || | |||||||||||| | ||| | || || ||||| | ||||| Sbjct 1639456 ACCTCGTCCTTCTTGGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGGGTG 1639515 Query 225863 CTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGG 225922 |||||| | ||||||||| || | ||| ||||| | | |||||||| | |||| Sbjct 1639516 GACTTGCCGGAGCCGTTGGGGCCCAGGAGACCGTAGCGCTGGCCGCGCTTAAGACGGAGG 1639575 Query 225923 CGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGG 225982 | || ||| || ||||||||| |||| ||||| ||| ||| ||| | ||| || Sbjct 1639576 TGGGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGGTTGAAGGTGCAGTTGCAGAGA 1639635 Query 225983 TCCTCACCCTCCTC 225996 |||||||| || || Sbjct 1639636 TCCTCACCTTCTTC 1639649 Score = 84.2 bits (92), Expect = 4e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGA 224496 |||||| || ||| | |||| | ||||| || |||| |||| ||||| || Sbjct 1638045 GAATTCCTTGGAGTGGGTGATAATGATGACACCACCCTCGAAGGACTTGAGGGCCTTGGA 1638104 Query 224497 AAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTG 224556 || ||||| || || || ||||| || |||| || ||||| || |||| ||| | ||| Sbjct 1638105 GAGGGCGCCGAGAGAGTCACGGTCGAGATAGTTGGTTGGCTCGTCGAGGACGATCAGGTG 1638164 Query 224557 GGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCC 224616 |||| ||||| | || | | || | ||| || ||||||||||||||| || Sbjct 1638165 AGGGCGTTGCCAGGAGCAGGCGGCGAGGACGACCTTGACACGCTGACCGCCAGAGAGACC 1638224 Query 224617 GCGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACC 224655 ||| || |||||||| | || ||||| ||| || || Sbjct 1638225 GCGCATGCGCGAGTGGGAGACGAGTTCGGCGTCGAGGCC 1638263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619393206920