Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq241 138 1e-27 >seq241 Length=1026449 Score = 138 bits (152), Expect = 1e-27 Identities = 330/493 (67%), Gaps = 7/493 (1%) Strand=Plus/Minus Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946 ||||| || | || || || ||||| || || |||||| ||| || ||| |||| || | Sbjct 700166 CCATG-CCTCTCCCACTCTCTTCAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCT 700108 Query 93947 TCCTGAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGT 94005 |||| || ||| | |||| ||| ||| || || | ||||| || ||| |||| Sbjct 700107 TCCTCATTGAC-ATGAAGGAGGACAGTATCGAAGGTATCTACGACACACTGAAGACCTGT 700049 Query 94006 GCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCA 94063 || || ||||| || || |||||||| | | |||||| |||| ||||||| Sbjct 700048 GCTTTGATTTCAAAGACTGCTGGAGGAATCGGTCTTAACGTCCAC--CGTATCCGTGCCA 699991 Query 94064 GGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGG 94123 || |||||||| || ||||| ||| |||||||||| ||||||| ||||| || | Sbjct 699990 CCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTG 699931 Query 94124 TCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCG 94183 | ||||||||| | || | || || ||||||||||| | | | ||| | || | Sbjct 699930 TGTTCAACAACACTGCCAGATATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTTG 699871 Query 94184 CGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACC 94243 | |||| || ||||| |||||||| || | | ||| | ||||| || ||||||| Sbjct 699870 CTATCTACCTGGAGCCATGGCACGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACC 699811 Query 94244 ACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTT 94303 | || || || | | ||| | || || |||| || | ||| || || | | Sbjct 699810 ATGGAAAGGAAGAAGTCCGTGCCCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGT 699751 Query 94304 TTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCG 94363 | ||||| || || || || || || |||| || || || || ||||| ||| | Sbjct 699750 TCATGAAGCGAGTTGAAAAGAATGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTG 699691 Query 94364 GACTGTCCGACGT 94376 || || | || || Sbjct 699690 GATTGGCTGATGT 699678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721585965560