Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq144 136 5e-27 seq241 102 1e-16 >seq144 Length=62475 Score = 136 bits (150), Expect = 5e-27 Identities = 309/458 (67%), Gaps = 15/458 (3%) Strand=Plus/Plus Query 127221 CCAGCTTGCCG-TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||||| | | || || || || ||||||||||||||||| ||||| ||| ||||| | Sbjct 14118 CCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAG 14177 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 127337 ||||| ||||| || || || ||||| | | ||| | | || ||| ||| | | Sbjct 14178 ATATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCA 14237 Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397 ||| || | ||| | |||| |||||||||||| |||| || || ||||| | Sbjct 14238 AC--GAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGC 14295 Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 ||| ||| ||| ||||| || || | |||| ||| ||| ||| || ||||| Sbjct 14296 CGAGAAGGGCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAG 14355 Query 127458 GTACGATGGCGTGAATAGTGTCCACCC----CAGGTCTATTGCGTAAAGTCTT-GAAGAG 127512 | |||||| | || || ||| |||| | || | | | || ||| || Sbjct 14356 TGATGATGGCCTCAACAG----CACTGGGGTCAGGACGATAGT-TGAGGTGAGAGAACAG 14410 Query 127513 TTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 127572 ||||| || ||| || || |||||||||||||||||||| || |||||| Sbjct 14411 AAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGT 14470 Query 127573 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 127632 || || ||||||||||| |||||||||| |||||| || | || ||||| ||| Sbjct 14471 GAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAA 14530 Query 127633 GAAGATCCCCTCCACACACGCGAACGCAAATAGACGCT 127670 ||| || ||||| || || || |||| || |||| Sbjct 14531 GAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCT 14568 >seq241 Length=1026449 Score = 102 bits (112), Expect = 1e-16 Identities = 672/1069 (63%), Gaps = 24/1069 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| || |||||||| || | ||||| || Sbjct 698480 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTG 698539 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||| | || || || || | || ||| | ||| || || || |||||| Sbjct 698540 ATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAG 698599 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 115735 || ||||| || ||||| | || || || | | | || |||||||||| || Sbjct 698600 GCGCCTCGATCAGCGGCCATCTGAA-CA-ATAGTACGTTGAGAAATTTCCCACACGGTCT 698657 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 |||| || ||| || || ||||||| | ||| |||||||| || ||||| | Sbjct 698658 TGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGG 698717 Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855 || || | | ||||||| | ||||| || || | | || || | | | Sbjct 698718 CGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTGAGAA 698777 Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATGTTGGTC 115914 | |||||||| ||||| || || || || | | || |||||||||| Sbjct 698778 GCCATGGGTTGACAACTTGGAACTCGCCAGCAAGTACACGGCGTGAG-TAGATGTTGGAG 698836 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCAT 115973 ||||| || ||||||||||| ||| | |||||| | | ||| || ||| || ||||| Sbjct 698837 GTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGCAT 698895 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 ||| || | || | |||||| |||| ||| | || | || || | || Sbjct 698896 GGGCGCAAGTAGTAAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCATC 698955 Query 116034 CCAGTCGTAGTTGAGCTTTGTCTCCC---CCTCCCACATATCAAACTGGAGGATACCTTG 116090 |||||| || || | ||| | | | ||||||||| | || || ||||| || Sbjct 698956 CCAGTCCCAG---AGGTCGGTCGGCGTTACGTTCCACATATCGTATTGAAGAATACCCTG 699012 Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 116150 || | || || |||||| | | ||||| || || |||| || | ||| | Sbjct 699013 AGAAACAGGAGAACCCTCATAGGAGGAGTATGGACCATCGACCTTGGCAAGTTCACACGA 699072 Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 116210 || | || || || || | ||||| || || | | |||| |||||| || Sbjct 699073 TGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCTTC 699132 Query 116211 GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 116270 | || || || | || || | || |||| || || || ||||| || | Sbjct 699133 GGGAGAGTCGAAGGGCAGTCGAAGAGCGAGGAAAGCATCGGCAAGGCCCTGGACCCCCAC 699192 Query 116271 GCCAATTGGGCGATGTCTCATATTAGACTT--TCGAGCGGTCTCCACGGGATAAAAATTC 116328 |||| |||||||| | | ||| ||| ||| || || || || || ||| Sbjct 699193 AGCAATGGGGCGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGTTC 699250 Query 116329 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 116388 | || || | || || | ||| || || |||| |||| |||||| || || | Sbjct 699251 CCGTCAATGATTCTGTTCAAGTTTCTGACAACGACCTGAGTGACTTCATGGAGTTTGCCA 699310 Query 116389 TAATCAAA---ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445 |||| | || |||| | ||| ||| | |||||||||| || || |||| Sbjct 699311 AAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTAGGAAGGGCAATAGAAGCCAAG 699367 Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505 ||||| || | |||||| | ||||| || | ||||| || || | |||||| Sbjct 699368 TTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTCAGTGCAAAGGTTTGAA 699427 Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGC 116565 || || || || | |||||||||||| |||| ||| || | ||||||||| ||| Sbjct 699428 CTACGGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTTGCAGGAATCCTTGTAAAGC 699487 Query 116566 ATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||| | || | || |||||||| |||| || |||||| || | ||||| Sbjct 699488 ATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGCGTACCATA 699536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505198432760