Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq144 159 3e-34 seq210 136 4e-27 seq104 82.4 8e-11 >seq144 Length=62475 Score = 159 bits (176), Expect = 3e-34 Identities = 356/518 (69%), Gaps = 16/518 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||| || || || || || ||||| || || || || || || | Sbjct 14111 CATGACACCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 14170 Query 132651 CAAGGAAATGAGCGTC-ATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGC 132706 | ||| || | ||| || || || |||||||||| ||||||||| | |||| | | Sbjct 14171 GAGGGAGAT-ATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTAC 14229 Query 132707 CGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCG 132765 | | || | ||||| ||||| ||||| |||||||| ||||| || ||||| | || | Sbjct 14230 CAAG-AG--CAACGAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAG 14286 Query 132766 CAATTAAGTCCCAGCAGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGC 132824 || | | | || || || |||| || || || ||||| | || |||||||||| Sbjct 14287 CATTCATG-CCGAGAAGG-GCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGT 14344 Query 132825 GACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTC-GGCCGTTGCACCAAATGCT 132883 ||| || || |||| ||| || ||| || | | | || || || | | || Sbjct 14345 GACTGCTTCAGTGATGATGGCCTCAACA-GCACTGGGGTCAGGACGATAGTTGAGGTGAG 14403 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||||| | ||| ||||| || || | ||| ||||| | ||| |||||||||||| Sbjct 14404 AGAACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGG 14463 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | ||||||||||| || || || || ||||| || |||| |||||| || Sbjct 14464 AGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGC 14523 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CT 133062 | ||||| | ||||||||||| || || || || ||||||| |||| |||| | Sbjct 14524 CGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAAT 14583 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 |||| || | |||||| || | ||||| |||||||| Sbjct 14584 TCTTATCTTG-GATCCATCGAATGGCCCAATCGGCCTT 14620 Score = 138 bits (152), Expect = 1e-27 Identities = 196/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||||||||||||| || || |||| ||||| | |||||||| |||||| ||| Sbjct 14745 TAGGTGTCGATGAGGAGAGAGTATGTTTCGGAGTGAATATTCTCCATCATGATTTGGAAG 14804 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || ||||| || || || |||||| ||||| | |||||| || | || || Sbjct 14805 CCATAGAAGCATCGAGCTTCCGGCACCTGGACTTCGTTGCTGAAACGTTCAAGGAGGTTC 14864 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||| |||||||| || ||||||||| ||||||| ||||| |||||| || Sbjct 14865 TCGTTAACGATGCCATCTGAGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGAATCGT 14924 Query 133348 TCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 || | ||| || | | | ||||||| | | ||||| || ||||| | ||| ||| Sbjct 14925 TCATCGTCATTGAGCCTGTTGTTCCAGTCGTGAATATCCTTAGAGAGGTCAATCTCTTCG 14984 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || || || ||||| |||||||| Sbjct 14985 GCAGTCCAGAAAGAAGCTTCAGCTTTCTTGTACAT 15019 >seq210 Length=1335347 Score = 136 bits (150), Expect = 4e-27 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||||||||| ||||| | || || || ||| | Sbjct 1131374 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 1131433 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| ||| |||| ||||| || || ||||| | |||| Sbjct 1131434 GACACGATAGACAACG--TCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACC 1131491 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || || |||||||| || |||| || || || ||| || | Sbjct 1131492 AGCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATA 1131551 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||| ||| |||||||||||||||| ||| ||||||| Sbjct 1131552 ACATCCAGAAGGAGAGC-ACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 1131600 Score = 118 bits (130), Expect = 1e-21 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| ||||| || || ||||| |||||||| | || ||||| ||| ||||| | Sbjct 1131153 TAGTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCA 1131212 Query 38311 TGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | |||| || |||| ||||| ||||| || || | ||||| || || Sbjct 1131213 TCGACAACG--TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACG 1131270 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 ||||| | || || |||||||| || |||| || |||||| |||||||||||||| Sbjct 1131271 TCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCA 1131330 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| | || || || | || || ||| || | || ||| Sbjct 1131331 AAAGGAATCAACTCTCCACCTTGTCCTTCGTCTGCGTGGAGGC 1131373 Score = 114 bits (126), Expect = 1e-20 Identities = 130/171 (76%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| || |||||| |||| || ||| ||| ||||| | | |||| | || Sbjct 1130870 TCACTGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACG--TCAA 1130927 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| ||||| ||||| || ||| | ||||| ||||| || || | ||| || Sbjct 1130928 GACCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTCGCAGG 1130987 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 |||||||| || |||| ||||||||| ||||||||||||||| ||||| Sbjct 1130988 AAAACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 1131038 >seq104 Length=3444964 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||||||| | ||||| ||||| || || | ||| || |||||||| || Sbjct 1585757 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTTGAG 1585698 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || || || ||||||||||| || ||||| | || || || | ||||| Sbjct 1585697 GACGGCCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTGCTC 1585638 Query 38457 CGT 38459 ||| Sbjct 1585637 CGT 1585635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171168186240