Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq144 159 3e-34
seq210 136 4e-27
seq104 82.4 8e-11
>seq144
Length=62475
Score = 159 bits (176), Expect = 3e-34
Identities = 356/518 (69%), Gaps = 16/518 (3%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| ||| || || || || || ||||| || || || || || || |
Sbjct 14111 CATGACACCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 14170
Query 132651 CAAGGAAATGAGCGTC-ATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGC 132706
| ||| || | ||| || || || |||||||||| ||||||||| | |||| | |
Sbjct 14171 GAGGGAGAT-ATTGTCCATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTAC 14229
Query 132707 CGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCG 132765
| | || | ||||| ||||| ||||| |||||||| ||||| || ||||| | || |
Sbjct 14230 CAAG-AG--CAACGAGAAGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAG 14286
Query 132766 CAATTAAGTCCCAGCAGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGC 132824
|| | | | || || || |||| || || || ||||| | || ||||||||||
Sbjct 14287 CATTCATG-CCGAGAAGG-GCACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGT 14344
Query 132825 GACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTC-GGCCGTTGCACCAAATGCT 132883
||| || || |||| ||| || ||| || | | | || || || | | ||
Sbjct 14345 GACTGCTTCAGTGATGATGGCCTCAACA-GCACTGGGGTCAGGACGATAGTTGAGGTGAG 14403
Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943
||||| | ||| ||||| || || | ||| ||||| | ||| ||||||||||||
Sbjct 14404 AGAACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGG 14463
Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003
||| || | ||||||||||| || || || || ||||| || |||| |||||| ||
Sbjct 14464 AGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGC 14523
Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CT 133062
| ||||| | ||||||||||| || || || || ||||||| |||| |||| |
Sbjct 14524 CGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAAT 14583
Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
|||| || | |||||| || | ||||| ||||||||
Sbjct 14584 TCTTATCTTG-GATCCATCGAATGGCCCAATCGGCCTT 14620
Score = 138 bits (152), Expect = 1e-27
Identities = 196/275 (71%), Gaps = 3/275 (1%)
Strand=Plus/Plus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
||||||||||||||| || || |||| ||||| | |||||||| |||||| |||
Sbjct 14745 TAGGTGTCGATGAGGAGAGAGTATGTTTCGGAGTGAATATTCTCCATCATGATTTGGAAG 14804
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287
|| || ||||| || || || |||||| ||||| | |||||| || | || ||
Sbjct 14805 CCATAGAAGCATCGAGCTTCCGGCACCTGGACTTCGTTGCTGAAACGTTCAAGGAGGTTC 14864
Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347
||||| |||||||| || ||||||||| ||||||| ||||| |||||| ||
Sbjct 14865 TCGTTAACGATGCCATCTGAGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGAATCGT 14924
Query 133348 TCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404
|| | ||| || | | | ||||||| | | ||||| || ||||| | ||| |||
Sbjct 14925 TCATCGTCATTGAGCCTGTTGTTCCAGTCGTGAATATCCTTAGAGAGGTCAATCTCTTCG 14984
Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || || || ||||| ||||||||
Sbjct 14985 GCAGTCCAGAAAGAAGCTTCAGCTTTCTTGTACAT 15019
>seq210
Length=1335347
Score = 136 bits (150), Expect = 4e-27
Identities = 172/230 (75%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || ||||||||||| ||||| | || || || ||| |
Sbjct 1131374 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 1131433
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | |||| | |||| ||| |||| ||||| || || ||||| | ||||
Sbjct 1131434 GACACGATAGACAACG--TCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACC 1131491
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||| | || || |||||||| || |||| || || || ||| || |
Sbjct 1131492 AGCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATA 1131551
Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| ||||| ||| ||| |||||||||||||||| ||| |||||||
Sbjct 1131552 ACATCCAGAAGGAGAGC-ACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 1131600
Score = 118 bits (130), Expect = 1e-21
Identities = 162/223 (73%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| ||||| || || ||||| |||||||| | || ||||| ||| ||||| |
Sbjct 1131153 TAGTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCA 1131212
Query 38311 TGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368
| | |||| | |||| || |||| ||||| ||||| || || | ||||| || ||
Sbjct 1131213 TCGACAACG--TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACG 1131270
Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428
||||| | || || |||||||| || |||| || |||||| ||||||||||||||
Sbjct 1131271 TCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCA 1131330
Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||| | || || || | || || ||| || | || |||
Sbjct 1131331 AAAGGAATCAACTCTCCACCTTGTCCTTCGTCTGCGTGGAGGC 1131373
Score = 114 bits (126), Expect = 1e-20
Identities = 130/171 (76%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| || |||||| |||| || ||| ||| ||||| | | |||| | ||
Sbjct 1130870 TCACTGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACG--TCAA 1130927
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| ||||| ||||| || ||| | ||||| ||||| || || | ||| ||
Sbjct 1130928 GACCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTCGCAGG 1130987
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
|||||||| || |||| ||||||||| ||||||||||||||| |||||
Sbjct 1130988 AAAACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 1131038
>seq104
Length=3444964
Score = 82.4 bits (90), Expect = 8e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| |||||||||||| | ||||| ||||| || || | ||| || |||||||| ||
Sbjct 1585757 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTTGAG 1585698
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| || || || ||||||||||| || ||||| | || || || | |||||
Sbjct 1585697 GACGGCCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTGCTC 1585638
Query 38457 CGT 38459
|||
Sbjct 1585637 CGT 1585635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171168186240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |