Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq172 122 7e-22 seq104 104 2e-16 seq74 86.0 5e-11 >seq172 Length=203 Score = 122 bits (134), Expect = 7e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| ||| |||||||| || || || ||||||| | || Sbjct 40 TTCTTGTCGAGACCATAGGCAATAGCGGCAGCAGTGGGCTCGTTGATAATTCGAAGCACG 99 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || | |||| | || |||||||| ||||||||||| || || ||||| |||||| Sbjct 100 TTCAGTCCTGAAATTGTGCCGGCATCTTTGGTGGCTTGTCTCTGAGAGTCGTTGAAATAT 159 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || ||||| |||| Sbjct 160 GCAGGAACTGTTATAACAGCAT 181 >seq104 Length=3444964 Score = 104 bits (114), Expect = 2e-16 Identities = 197/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| || ||||| || ||||| ||||| | ||| | || | || | | ||| Sbjct 2325778 ACGAGACGGTTGTCAAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACT 2325719 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || ||||| | | || || | ||||| ||| |||||||| | ||| Sbjct 2325718 TCGAAGATACCCTCTTCGATGGTCAGGAGGGAGACATCGAAGGTACCACCACCGAGATCG 2325659 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || ||||| || ||| || || || ||||| || |||| ||||||| Sbjct 2325658 AAGATGAGAACATTGCGCTCACCGTCAGCCTTCTTGTCGAGACCGTAGGCAATAGCAGCA 2325599 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 ||||| || || || || || | | || || ||||| ||||| || || || ||| Sbjct 2325598 GCAGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTA 2325539 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || ||||| | || || ||||| || || ||||| ||||| || || || Sbjct 2325538 GTAGCTTGACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGC 2325489 >seq74 Length=260272 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 668842 TGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGA 668901 || |||| ||| || |||||||||||| | || || |||||||||||||||| || Sbjct 122425 TGGAAGACTAAAGGGAAAAGAAGGTCGTCTCCGACAGAACCTGATGGGAAAACGTGTGGA 122366 Query 668902 TATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGT 668961 | || || ||||| || |||||| ||||| ||| | |||| |||| ||||| || Sbjct 122365 CTTCTCAGCTCGTACTGTCATTACTGGCGATCCGAATCTCTCTCTTGATGAGGTTGGAGT 122306 Query 668962 TCCTCTTATTATTGC 668976 |||| ||| ||||| Sbjct 122305 TCCTATTAGCATTGC 122291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780809448320266