Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq241 150 2e-31 seq144 109 7e-19 seq1 91.5 2e-13 >seq241 Length=1026449 Score = 150 bits (166), Expect = 2e-31 Identities = 471/718 (66%), Gaps = 16/718 (2%) Strand=Plus/Minus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | || |||||| || | || || |||||||| | || | |||||||||||| || Sbjct 699534 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 699475 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 |||| |||| |||||| ||||||||||| | ||| ||| ||||| ||||| || Sbjct 699474 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 699415 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 112457 || |||||| | |||| || | | ||||||| || || |||||| | || || || Sbjct 699414 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 699355 Query 112458 GCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGA 112516 || || || | | ||||||| | | | || || |||| || |||||||| || Sbjct 699354 GCCCTTCCTACCTTTGTGGATGCTGTTCGCGGTGA-ATACGATTTTGGCAAACTCCATGA 699296 Query 112517 AGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT 112576 ||| || | || | |||| | |||||| | ||||| | || ||||| || Sbjct 699295 AGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCGGT 699236 Query 112577 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCT 112636 ||| || || | ||| | | || || || |||| | | || ||||| || || Sbjct 699235 TGAAGAGGCACGACGAAGCAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGGGCCT 699176 Query 112637 CGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA 112696 || |||| ||| | | ||| | | || || || |||||| ||| | || Sbjct 699175 TGCCGATGCTTTCCTCGCTCTTCGACTGCCCTTCGACTCTCCCGAAGCCAAGCTTTTGAA 699116 Query 112697 TGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA--GGCGAGTTCGGAGTTGGCA 112754 | | || || ||||| | || || || || |||| | || | | ||| || Sbjct 699115 CACCCAAATCTTCGAGACCCTTTACCATGCTGC-GTTGACCGCATCGTGTGAACTTGCCA 699057 Query 112755 GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAA 112814 |||| ||||||||||| ||| |||||||||||| | ||| || || | |||||| Sbjct 699056 -AGGTCGATGGTCCATACTCCTCCTATGAGGGTTCTCCTGTTTCTCAGGGTATTCTTCAA 698998 Query 112815 TTTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGA 112870 | ||||||| |||| || | |||| | || || |||||||| | ||| || | Sbjct 698997 TACGATATGT-GGAACGTAACGCCGACCGACCT---CTGGGACTGGGATGGTCTTAAAGC 698942 Query 112871 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 112930 ||| || | ||| | |||||||| | | | || || |||||||| ||| Sbjct 698941 TGAGATCTCCAAGCACGGTGTCCGTAACAGCTTACTACTTGCGCCCATGCCAACTGCCAG 698882 Query 112931 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 |||| || | |||||| | || || ||||||||||| ||||| | |||||||| Sbjct 698881 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTA 698825 Score = 131 bits (144), Expect = 2e-25 Identities = 410/630 (65%), Gaps = 19/630 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||| | ||||| || || |||||||||| || || || |||| || Sbjct 700264 CCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTA 700205 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTT 111730 | || |||||| | ||||||| | || |||| ||| || | || || ||||| Sbjct 700204 ATTGAAACATACAATCTCATGTCCCA-GAAATACTTCACCCATGCCTCTCCCACTCTCTT 700146 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || || || || || |||||| | || ||||| |||| | |||||||| Sbjct 700145 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 700086 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTCAAAGTGGG 111846 ||| | || || |||| ||| |||||| ||||| || |||||| | Sbjct 700085 CAGTATCGAAGGTATCTACGACAC----ACTGAAGACCTGTGCTTTGATTTCAAAGACTG 700030 Query 111847 CTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTA 111906 |||| || ||||| | || |||| | || | |||| | || ||| || | Sbjct 700029 CTGGAGGAATCGGTCTTAACGTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAA 699970 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || || | || || | || |||||||| || || ||| ||| || | | Sbjct 699969 CCAACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGAT 699910 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| |||| | ||| ||||| ||| || | || |||| || ||||||| Sbjct 699909 ATGTCGACCAGGGTGGCAACAAGCGTCC--AGGTGCCTTT-GCTATCTACCTGGAGCCAT 699853 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| |||||| | ||||||||||| | || ||||| || | || || | | Sbjct 699852 GGCACGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCC 699793 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||| ||||| |||| || | |||| ||| ||| | ||||||||| ||||||| Sbjct 699792 GTGCCCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAA 699733 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| |||| ||||| | || || || || | |||| || || | | |||| | | Sbjct 699732 AGAATGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACG 699673 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGT 112230 | || ||||| || || | ||| ||||| Sbjct 699672 GAGAAGAGTTCGAGGCATTGTACGAAAAGT 699643 >seq144 Length=62475 Score = 109 bits (120), Expect = 7e-19 Identities = 161/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GC 102168 ||||||||| || | ||||| || |||||||| || | | | ||| ||| | | Sbjct 14639 AGTTCCATGCATCCGCAAGAAGGCCGATTGGGCCAT----TCGATGGATCCAAGATAAGA 14584 Query 102169 GTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 |||| || || |||| || | || ||||| || |||||||| |||||| | Sbjct 14583 ATTCCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCG 14524 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | |||||| | | || | ||||| |||||||| ||||||||||| || ||| ||||| Sbjct 14523 GCTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCT 14464 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| || ||||| |||||||| || || ||| || ||||| Sbjct 14463 CCAACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGC 14418 >seq1 Length=4062027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 217/324 (67%), Gaps = 17/324 (5%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || || | | || || | ||| ||| |||||||||||| | Sbjct 2714327 AATCCATCCATTTCAGTGAGTATTTGATTGAGAGTGCTTTCACGTTCATCATTCCC---- 2714382 Query 16035 ATACCACCA-----GCACTGCG---TTG-CTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||||||| | | | || ||| |||||| | ||||||||| || ||||||||| Sbjct 2714383 --ACCACCAAAGTTGGATTTCGATCTTGACTTTCCGATGGCATCAATTTCGTCAATGAAG 2714440 Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 16145 | ||| ||||| |||| ||||| | |||| || || || ||||| | ||| Sbjct 2714441 ATGATACATGGGGTGTTTTTTCGAGCAATAGCAAATAGGTCGCGAACACGGGAAGGGCCA 2714500 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGA 16204 || ||||| ||||||||||| || | | | || || || | |||||| ||| || Sbjct 2714501 ACGCCAACGAACATCTCCACGAATTCAGAGCCGCTGACGCTGTA-GAAGGGAACAGCGGA 2714559 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 || || ||| | || || || ||||| ||||| ||||||||| || | || | Sbjct 2714560 CTCGCCGGCAGTCGCCTTTGCTAGTAGAGTTTTACCGGTACCTGGCGGCCCAGAAAGAAT 2714619 Query 16265 GGCACCTCGTGGAATCTTGGCGCC 16288 || ||||| || || || || || Sbjct 2714620 AGCTCCTCGAGGTATTTTCGCACC 2714643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740374827920