Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq144 138 2e-27 seq241 111 3e-19 >seq144 Length=62475 Score = 138 bits (152), Expect = 2e-27 Identities = 346/519 (67%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | | ||||| || || Sbjct 14126 CTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAGATATTGTC 14185 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||||||||||| ||||| || | | | ||| | || | | || Sbjct 14186 CATGAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTA--CCAAGAGCAACGAGA 14243 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || ||| |||||| |||| ||||| | ||||||| | |||||||| | ||| Sbjct 14244 AGCCTATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGCCGAGAAGG 14303 Query 48017 GACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||| ||| | || | || | ||||||| ||| || || ||||| | || Sbjct 14304 G-CACAGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGAT 14362 Query 48076 CTGCTTAACG---CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| | || || | | | |||| ||||| | | || | ||| Sbjct 14363 GGCCTCAACAGCACTGGGGTCAGGACGATAGTTG---AGGTGAGAGA---ACAGAAGGCA 14416 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 |||||| || |||| | ||||||||| ||| |||||| ||||||||||| ||| || Sbjct 14417 GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCC 14476 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||||| || | || || |||||||| || | ||||| ||||| |||||| || Sbjct 14477 GGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAAT 14536 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || || || || || | || | |||| | | ||||| ||| ||| Sbjct 14537 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTCTTATCTTGGAT 14596 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||||| || |||||||| ||||||||| Sbjct 14597 CCATCGAATGGCCCAATCGGCCTTCTTGCGGATGCATGG 14635 >seq241 Length=1026449 Score = 111 bits (122), Expect = 3e-19 Identities = 143/197 (73%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| ||||| || || || || |||||||| || |||||||| ||| Sbjct 699798 TCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGCCATGGC 699857 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCC 213989 |||| |||||| |||||||| || || | |||| || |||||||| || ||||| Sbjct 699858 TCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATATCTGGCA 699917 Query 213990 ACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT 214049 ||||||| | || || | ||| || | |||||||| ||||||||||| || Sbjct 699918 GTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCA 699977 Query 214050 ATATACGAGCCGGAGGC 214066 || || || |||| ||| Sbjct 699978 ATGTAGGATCCGGTGGC 699994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529760874240