Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq241 134 3e-26 seq144 122 2e-22 >seq241 Length=1026449 Score = 134 bits (148), Expect = 3e-26 Identities = 409/620 (66%), Gaps = 18/620 (3%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| | || || |||||| ||| || ||||| | || || || || Sbjct 699743 CTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAATAGATCACGGGCACGGACTTCTTC 699802 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | || | ||| || | || || | |||||||| || ||||||||||| |||||||| Sbjct 699803 CTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAG 699862 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG 222215 |||| || | || || || ||||||||||||||||| || | ||| ||| ||| | Sbjct 699863 GTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA-CAT-ATCTGGCAGTG 699920 Query 222216 -CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATG 222274 |||||| | ||||| | || || | ||||||||| |||||||| || |||| Sbjct 699921 TTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATG 699980 Query 222275 TACGCACCGCCGGCCCTCAGGTTAC--TGGCAGACATG-CCGATACCACCGGC-GTGTTT 222330 || | ||| ||| | || ||| ||| | | | ||||| || || || || ||| Sbjct 699981 TAGGATCCGGTGGCAC---GGATACGGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTT 700037 Query 222331 CGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGAC 222390 || |||| || ||| |||| || ||||| ||| || || ||| ||||||||| | Sbjct 700038 -GAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCAT 700096 Query 222391 GTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGG 222450 || | || || || || | ||| || | | | || | ||| || || || ||||| Sbjct 700097 GTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGG 700156 Query 222451 ACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGAT 222510 | ||| || || ||||| | ||||| |||| ||| || || | ||| | | | Sbjct 700157 AGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTCTCAAC 700216 Query 222511 GTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGG 222570 || || ||||| || | ||| || ||| ||| | ||| |||| | ||| Sbjct 700217 GTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATGCTGTGGCCGTT---CAGC 700273 Query 222571 ACCCTTGGAGCTGG---AGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 | ||||| | ||| |||||||| || |||| || |||||||| || || || | Sbjct 700274 AACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAATACTG 700333 Query 222628 GAGGTCAAAGTCTCTGCCGT 222647 | || |||||| | | ||| Sbjct 700334 GTAGTTAAAGTCACGGTCGT 700353 >seq144 Length=62475 Score = 122 bits (134), Expect = 2e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || ||||||||||| || ||||| || || |||||||| || || || ||| Sbjct 14568 AGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCA 14509 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||| ||| || || ||||||||| || ||| |||||||| |||||| Sbjct 14508 TCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCT 14449 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 | | ||||| || || |||| |||||||||||||| || Sbjct 14448 CCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCT 14409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841769643840