Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq241 134 3e-26
seq144 122 2e-22
>seq241
Length=1026449
Score = 134 bits (148), Expect = 3e-26
Identities = 409/620 (66%), Gaps = 18/620 (3%)
Strand=Plus/Plus
Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096
|| |||||| | || || |||||| ||| || ||||| | || || || ||
Sbjct 699743 CTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAATAGATCACGGGCACGGACTTCTTC 699802
Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156
| || | ||| || | || || | |||||||| || ||||||||||| ||||||||
Sbjct 699803 CTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAG 699862
Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG 222215
|||| || | || || || ||||||||||||||||| || | ||| ||| ||| |
Sbjct 699863 GTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA-CAT-ATCTGGCAGTG 699920
Query 222216 -CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATG 222274
|||||| | ||||| | || || | ||||||||| |||||||| || ||||
Sbjct 699921 TTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATG 699980
Query 222275 TACGCACCGCCGGCCCTCAGGTTAC--TGGCAGACATG-CCGATACCACCGGC-GTGTTT 222330
|| | ||| ||| | || ||| ||| | | | ||||| || || || || |||
Sbjct 699981 TAGGATCCGGTGGCAC---GGATACGGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTT 700037
Query 222331 CGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGAC 222390
|| |||| || ||| |||| || ||||| ||| || || ||| ||||||||| |
Sbjct 700038 -GAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCAT 700096
Query 222391 GTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGG 222450
|| | || || || || | ||| || | | | || | ||| || || || |||||
Sbjct 700097 GTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGG 700156
Query 222451 ACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGAT 222510
| ||| || || ||||| | ||||| |||| ||| || || | ||| | | |
Sbjct 700157 AGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTCTCAAC 700216
Query 222511 GTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGG 222570
|| || ||||| || | ||| || ||| ||| | ||| |||| | |||
Sbjct 700217 GTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATGCTGTGGCCGTT---CAGC 700273
Query 222571 ACCCTTGGAGCTGG---AGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627
| ||||| | ||| |||||||| || |||| || |||||||| || || || |
Sbjct 700274 AACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAATACTG 700333
Query 222628 GAGGTCAAAGTCTCTGCCGT 222647
| || |||||| | | |||
Sbjct 700334 GTAGTTAAAGTCACGGTCGT 700353
>seq144
Length=62475
Score = 122 bits (134), Expect = 2e-22
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| || || ||||||||||| || ||||| || || |||||||| || || || |||
Sbjct 14568 AGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCA 14509
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||| ||| || || ||||||||| || ||| |||||||| ||||||
Sbjct 14508 TCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCT 14449
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036
| | ||||| || || |||| |||||||||||||| ||
Sbjct 14448 CCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCT 14409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928841769643840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |