Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq221 140 4e-27
seq241 138 1e-26
seq144 107 2e-17
>seq221
Length=1318375
Score = 140 bits (154), Expect = 4e-27
Identities = 100/115 (87%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| ||||||||||||||||||||| | ||||||| |||| |||||| | || || |||
Sbjct 826587 GCTGCCAACTACCTCGACATCAAGGCCTTGCTCGACGTTGGATGCAAGACCGTCGCAAAC 826646
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| ||||||||||||||||||||||| |||||| || |||
Sbjct 826647 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCCAGAACG 826701
>seq241
Length=1026449
Score = 138 bits (152), Expect = 1e-26
Identities = 204/289 (71%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| || | || |||| ||| || || || |||||||| |||| ||||||||
Sbjct 699899 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 699958
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||| || || | ||||| |||| ||| || | ||| || || ||
Sbjct 699959 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 700018
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || || | ||| || || | || || || || ||||||||||| || ||
Sbjct 700019 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 700078
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| | ||| ||||| || | ||||||| |||| || ||
Sbjct 700079 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 700138
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353
||| |||||||| ||||| | || |||||| | | | | ||||||
Sbjct 700139 GGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATG 700187
>seq144
Length=62475
Score = 107 bits (118), Expect = 2e-17
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758
||| || || || ||| |||||| |||||||||||||| |||| ||||| |||||
Sbjct 14129 GTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAGATATTGTCCAT 14188
Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818
| ||| ||||||| || |||||| ||| | | || || | |||| || |
Sbjct 14189 GAAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCAACGAGAAGCCT 14248
Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878
|||||||| ||||| ||||||||||||||||| || |||||||||| || ||
Sbjct 14249 ATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGCCGAGAAGGGCACA 14308
Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932
|| || | ||| ||| ||||| | |||||| ||| || || ||||||
Sbjct 14309 GGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGAT 14362
Score = 95.1 bits (104), Expect = 1e-13
Identities = 138/192 (72%), Gaps = 5/192 (3%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|||||||| || ||| | ||||||| |||| ||| ||||||||||| || ||||||
Sbjct 14436 CCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTC 14495
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|| ||||| ||||||| | ||| ||| ||| || || ||||||||||| ||||||
Sbjct 14496 TTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAAG 14555
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCCA 869358
| | || |||| || || ||| || | | |||| |||||| || |||||
Sbjct 14556 GCAACAAGGCGCTGTGCGAA--TGTGGAATTCTTATCTTG--GATCCATCGAATGGCCCA 14611
Query 869359 GTCGGCCTTTTT 869370
|||||||| ||
Sbjct 14612 ATCGGCCTTCTT 14623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107117781117737
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |