Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq241 132 8e-25 seq221 131 3e-24 seq144 107 3e-17 seq210 105 1e-16 >seq241 Length=1026449 Score = 132 bits (146), Expect = 8e-25 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| | || |||| ||| || || || |||||||| || | |||||||| Sbjct 699899 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 699958 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||| || || | ||||| || | ||| || | ||| || || || Sbjct 699959 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 700018 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || || | ||| || || | || || | ||||| || |||||||| || || Sbjct 700019 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 700078 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || | ||||||| ||| || || Sbjct 700079 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 700138 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||||||| ||||| Sbjct 700139 GGCATTGAAGAGAGTGGG 700156 >seq221 Length=1318375 Score = 131 bits (144), Expect = 3e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||||||||||||| || | ||||| | || ||||||||||| || ||| Sbjct 826587 GCTGCCAACTACCTCGACATCAAGGCCTTGCTCGACGTTGGATGCAAGACCGTCGCAAAC 826646 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| |||||||| |||||||||||||| |||||| || ||| Sbjct 826647 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCCAGAACG 826701 >seq144 Length=62475 Score = 107 bits (118), Expect = 3e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| |||||| |||||||||||||| |||| ||||| ||||| Sbjct 14130 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGGGAGATATTGTCCATG 14189 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG-CACC-CGAGCGACGCAAGCAGGC 794025 | ||| ||||||| || |||| ||||| | ||| |||| ||| || || | Sbjct 14190 AAGTCGAAGGGGTTGGTGGTGTTGTAGAACTTCTTGTTACCAAGAGCAACG--AGAAGCC 14247 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||||||||||| |||||||||||||||||||| || |||||||||| || || Sbjct 14248 TATCGGCGACGAACTCAATGTACTGGCACATGAGCTTAGCATTCATGCCGAGAAGGGCAC 14307 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||| || | ||| | | ||||| | |||||| ||| || || ||||||| Sbjct 14308 AGGGGAGGGCATCGGTCAAGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGAT 14362 Score = 89.7 bits (98), Expect = 8e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||| | ||||||| ||| ||| ||||||||||| || |||||| Sbjct 14436 CCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTC 14495 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| ||| ||| ||| || || ||||||||||| |||||| Sbjct 14496 TTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAAG 14555 Query 794461 CCGACGAGCCGCTCGGCAAAAGTG 794484 | || || |||| || || ||| Sbjct 14556 GCAACAAGGCGCTGTGCGAATGTG 14579 >seq210 Length=1335347 Score = 105 bits (116), Expect = 1e-16 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| || || ||||| |||||| |||||||||| ||| ||| Sbjct 195810 GTACTTGGTGACGGCCTTGGTGCCTTCAGAGACAGCGTGCTTGGCCAGTTCACCGGGCAG 195869 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||| || || |||| |||||| ||||| | |||| ||| ||| Sbjct 195870 GATGAGACGGACGGAGGTCTGAATCTCTCTGGTGGAGATGGTG 195912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916218636239579