Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq210 125 7e-24 seq123 105 6e-18 >seq210 Length=1335347 Score = 125 bits (138), Expect = 7e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||| | ||| ||| ||||| || || |||||| || ||| || || ||||| | Sbjct 1131579 AAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCG--TCCTCAA 1131522 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || || | ||||| ||||||||||| || || || ||||||||||| || Sbjct 1131521 GCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGA 1131462 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||||| | || | ||||||| ||| || || || | |||| ||||||| Sbjct 1131461 TCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTACTTCCAGAGTGATAGTTTTGC 1131402 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | ||||| || || ||||| ||||||||| || Sbjct 1131401 CCGTCAGTGTCTTGACGAAGATCTGCATGCCT 1131370 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||| || || || | ||||| || |||||||| ||||||||||| ||||| Sbjct 1131301 GTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTT 1131242 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| ||| || || || | |||| Sbjct 1131241 GTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGAT 1131182 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGA 133650 ||| ||||||||||||||||| |||| Sbjct 1131181 GGTCTTGCCGGTCAGAGTTTTCACGA 1131156 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| ||| ||||| || ||||| ||| | ||| |||||||||||| || || Sbjct 1131045 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGTTTTCC 1130986 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1130985 TGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTT 1130926 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | |||| |||||| ||| |||||| |||| ||||| || ||||| || Sbjct 1130925 GACGTTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTCTTGCCAGT 1130872 >seq123 Length=229 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || |||| ||||||||| || || |||||||||||||| |||||| ||||| | | Sbjct 223 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTC 164 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| |||||| ||||||| || || | ||||| ||| |||||||| || || || || Sbjct 163 TCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACA 104 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 103 AAGATCTGCAT 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419222839640