Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq241 114 1e-20 >seq241 Length=1026449 Score = 114 bits (126), Expect = 1e-20 Identities = 356/548 (65%), Gaps = 5/548 (1%) Strand=Plus/Plus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGC 147940 |||| || |||||||| || || | ||||| || | |||||| |||||| || | Sbjct 699838 AGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC 699897 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 |||||||||||| | | ||||||| ||||| || | |||||| | | ||| | | Sbjct 699898 CCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGG 699957 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 | ||||||||| | || | | ||| ||| || | ||| ||||||| | Sbjct 699958 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGAC 700017 Query 148061 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119 | || || || || || |||||| || ||| || || ||| |||||| || Sbjct 700018 CGATTCCTCCAGCAGT-CTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 700076 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| ||||| | || | | ||| | || || ||| ||||||||| | | ||| Sbjct 700077 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTT 700136 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || ||| || |||||| || || || || |||| || ||| | || Sbjct 700137 CCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTAT 700196 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299 || ||||| | | || | ||| || ||||| || || | || || ||||| | ||| Sbjct 700197 GTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATA 700256 Query 148300 TGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTT 148359 |||||||| ||||| ||||| | |||| | || || ||| |||| || || Sbjct 700257 TGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTC 700316 Query 148360 TTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGCATCTAGTGTC 148419 ||| | || || |||| ||| | ||| || | ||||| | || |||| | ||| Sbjct 700317 TTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCT 700376 Query 148420 TCAGCATG 148427 |||||||| Sbjct 700377 TCAGCATG 700384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609645055960