Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq241 223 5e-53 seq144 93.3 6e-14 >seq241 Length=1026449 Score = 223 bits (246), Expect = 5e-53 Identities = 592/898 (66%), Gaps = 10/898 (1%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| || ||||| | |||||| ||||||||||| ||||| || || | | | | Sbjct 699660 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 699719 Query 69577 CACACATCATCATCCTT---AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 || ||| ||| ||| |||||| ||||| || | ||| ||| |||| | || | Sbjct 699720 CA---ATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAG 699776 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 || ||||| | || | |||||| ||||| || || || || || ||||| Sbjct 699777 AATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCA 699836 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCT 69753 | ||||||| |||||||| || || || || || | | | || || || || || || Sbjct 699837 AAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCA 699896 Query 69754 CCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTA 69813 ||||| || | |||||||||||||| || | || | ||||| || | || || || Sbjct 699897 CCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTG 699956 Query 69814 GATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGA 69873 || || || ||||||| ||| || ||| | || || ||| | ||| Sbjct 699957 GAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGA 700016 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || |||||||| || | || || || | |||||| |||| |||||| || ||||| Sbjct 700017 CCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 700076 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || || || || |||||| || || || ||| || |||||| | || ||| Sbjct 700077 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTT 700136 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || ||||| || | || ||||| || || ||||| |||| | || | ||||||||| Sbjct 700137 CCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTAT 700196 Query 70054 GTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACAT 70112 |||||||| || || | ||| ||| | || || || | || || ||||| | ||| Sbjct 700197 GTTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCAT 700255 Query 70113 ATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 |||||| || ||||| | || || || | ||||||||| |||| || || Sbjct 700256 ATGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGT 700315 Query 70173 TTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 || || || ||||| | ||| |||||| | ||||| | |||| | || || |||| Sbjct 700316 CTTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTC 700375 Query 70233 ATCCTTATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACC 70292 || || ||| | || || ||| | | || || || |||| | | || Sbjct 700376 TTCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCC 700435 Query 70293 ATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTA-AATAGtttttttG 70351 || ||||| ||||| |||| | | || || || || || | ||| | || || | Sbjct 700436 GTTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGG 700494 Query 70352 TTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 ||| ||||| | || || | |||||||| || || ||||| |||||||| ||||| Sbjct 700495 TTTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 700552 >seq144 Length=62475 Score = 93.3 bits (102), Expect = 6e-14 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | |||||| || ||| |||||||| || || | || | |||||| || Sbjct 14406 AACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAG 14465 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || |||||||| ||||| ||||||||||| || ||||| || |||| || || || || Sbjct 14466 AAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCG 14525 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 ||||| || || || || || ||||| |||||||| | || | || | | | || Sbjct 14526 CTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTC 14585 Query 39788 TTA---TGTATCCA-CTTCTGTGCCCAATCAGCTTTCTT 39822 ||| || ||||| | || |||||||| || ||||| Sbjct 14586 TTATCTTGGATCCATCGAATG-GCCCAATCGGCCTTCTT 14623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906558960040