Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
>seq1
Length=4062027
Score = 91.5 bits (100), Expect = 1e-13
Identities = 226/343 (66%), Gaps = 9/343 (3%)
Strand=Plus/Plus
Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA------GGTTC---T 19602
|||||||| || | ||||||||||| || | || || |||||| ||| | |
Sbjct 1977176 CACATTATCATTTTTGATGAATTGGATGCTGTTTGCAAACAAAGAGGCAGCGGTGCCGGT 1977235
Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
|||| || || || || | ||||||||| ||||| || ||||| | |||||||||
Sbjct 1977236 GGTGGAACGGGTGTTGGCGATAGTGTTGTCAACCAACTTCTATCAAAGCTCGACGGTGTT 1977295
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
|||| || || ||||| | |||| || ||||| || || |||| | || ||
Sbjct 1977296 GACCAGCTAAACAATATCCTCCTTATAGGAATGACAAACCGAATGGACATGATTGATGAT 1977355
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
||| || | || || ||||| |||| | | || ||||| | | || |||||| |
Sbjct 1977356 GCCCTACTGCGTCCAGGTCGACTGGAGGTCCATATGGAAATATCCCTCCCAGATGAACAT 1977415
Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842
|| || | |||| || || || ||||| | |||||| | || || || | |
Sbjct 1977416 GGCCGGGCTCAAATATTGAAAATCCATACCCAGAAAATGCGAGAGAACGACGTTATGGAC 1977475
Query 19843 GACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885
|| || ||||| | || ||||||| |||||| ||||
Sbjct 1977476 CGAGACGTGGATCTCAAGGAGCTTGCAGCACTTACCAAGAACT 1977518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397454735717305
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |