Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq241 152 6e-32 seq144 104 3e-17 seq1 95.1 1e-14 >seq241 Length=1026449 Score = 152 bits (168), Expect = 6e-32 Identities = 470/717 (66%), Gaps = 14/717 (2%) Strand=Plus/Minus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || |||||| || | || || |||||||| | || | ||||||||||| || Sbjct 699534 TGGTACGCCATTCTCGAGGCCCAGACGGAGACTGGAAACCCCTTTATGCTTTACAAGGAT 699475 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 |||| |||| |||||| ||||||||||| | ||| ||| ||||| || || || Sbjct 699474 TCCTGCAACCGAAAGAGCAATCAAAAGAACCTTGGTACTATCCGTAGTTCAAACCTTTGC 699415 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 105067 || |||||| | |||| || | | ||||||| || || |||||| | || || || Sbjct 699414 ACTGAAATCGTTGAATACACCGCCCCAGATGAGGTTGCAGTTTGTAACTTGGCTTCTATT 699355 Query 105068 GCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGA 105126 || || || | | ||||||| | | | || || |||| || |||||||| || Sbjct 699354 GCCCTTCCTACCTTTGTGGATGCTGTTCGCGGTGA-ATACGATTTTGGCAAACTCCATGA 699296 Query 105127 AGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT 105186 ||| || | || || |||| | |||||| | ||||| | || ||||| || Sbjct 699295 AGTCACTCAGGTCGTTGTCAGAAACTTGAACAGAATCATTGACGGGAACCACTACCCGGT 699236 Query 105187 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCT 105246 ||| || || | ||| | | || || || |||| | | || || ||||| || Sbjct 699235 TGAAGAGGCACGACGAAGCAATTTCCGTCATCGCCCCATTGCTGTGGGGGTCCAGGGCCT 699176 Query 105247 CGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA 105306 || |||| ||| | | ||| | | || || || |||||| ||| | || Sbjct 699175 TGCCGATGCTTTCCTCGCTCTTCGACTGCCCTTCGACTCTCCCGAAGCCAAGCTTTTGAA 699116 Query 105307 TGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTGGCAG 105365 | | || || |||||| | || || || || |||| || | || | || Sbjct 699115 CACCCAAATCTTCGAGACCCTTTACCATGCTGC-GTTGACCGCATCGTGTGAACTTGCCA 699057 Query 105366 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAAT 105425 |||| ||||||||||| ||| |||||||||||| | ||| || || | ||||||| Sbjct 699056 AGGTCGATGGTCCATACTCCTCCTATGAGGGTTCTCCTGTTTCTCAGGGTATTCTTCAAT 698997 Query 105426 TTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAA 105481 ||||||| |||| || | |||| | || || |||||||| | ||| || | Sbjct 698996 ACGATATGT-GGAACGTAACGCCGACCGACCT---CTGGGACTGGGATGGTCTTAAAGCT 698941 Query 105482 CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCC 105541 ||| || | ||| | |||||||| | || | || || |||||||| ||| | Sbjct 698940 GAGATCTCCAAGCACGGTGTCCGTAACAGCTTACTACTTGCGCCCATGCCAACTGCCAGC 698881 Query 105542 ACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 ||| || | |||||| | || || ||||||||||| ||||| | |||||||| Sbjct 698880 ACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTA 698825 Score = 143 bits (158), Expect = 3e-29 Identities = 409/626 (65%), Gaps = 11/626 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||| | ||||| || ||| ||||||| || || || ||| |||| || Sbjct 700264 CCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGTA 700205 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 104340 | || |||||| | |||||||| | || |||| || || | || || ||||| Sbjct 700204 ATTGAAACATACAATCTCATGTCCCA-GAAATACTTCACCCATGCCTCTCCCACTCTCTT 700146 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||||| || || || || |||||| | |||||||| || | || |||||||| Sbjct 700145 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 700086 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | || || | | ||||| || |||||| ||||| Sbjct 700085 CAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGG 700026 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || | || |||| | | | |||| ||| ||| || || || Sbjct 700025 AGGAATCGGTCTTAACGTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAA 699966 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || || | || |||||||| || || ||| ||| || | ||||| Sbjct 699965 CGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATATGT 699906 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | || | ||| ||||| | || | | || |||| || ||||||||||| Sbjct 699905 CGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTTGCTATCTACCTGGAGCCATGGCA 699849 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| |||||| | ||||||||||| | || ||||| || | || || | || Sbjct 699848 CGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGC 699789 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| ||||| |||| || | |||| ||| ||| | ||||||||| ||||||| ||| Sbjct 699788 CCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAA 699729 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 |||| ||||| | || || || || | |||| ||||| | | |||| | || || Sbjct 699728 TGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGA 699669 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGT 104840 ||||| || || | ||| ||||| Sbjct 699668 AGAGTTCGAGGCATTGTACGAAAAGT 699643 >seq144 Length=62475 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GC 94792 |||||| || || | ||||| || |||||||| || | | | ||| ||| | | Sbjct 14639 AGTTCCATGCATCCGCAAGAAGGCCGATTGGGCCAT----TCGATGGATCCAAGATAAGA 14584 Query 94793 GTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 |||| || || |||| || | || ||||| || |||||||| |||||| | Sbjct 14583 ATTCCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCG 14524 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | |||||| | | || | ||||| |||||||| ||||||||||| || ||| ||||| Sbjct 14523 GCTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCT 14464 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| || ||||| |||||||| || || ||| || ||||| Sbjct 14463 CCAACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGC 14418 >seq1 Length=4062027 Score = 95.1 bits (104), Expect = 1e-14 Identities = 218/324 (67%), Gaps = 17/324 (5%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || || | | ||| || | ||| ||| |||||||||||| | Sbjct 2714327 AATCCATCCATTTCAGTGAGTATTTGATTGAGAGTGCTTTCACGTTCATCATTCCC---- 2714382 Query 9674 ATACCACCA-----GCACTGCG---TTG-CTTTCCCACGGCATCAATCTCATCAATGAAG 9724 ||||||| | | | || ||| |||||| | ||||||||| || ||||||||| Sbjct 2714383 --ACCACCAAAGTTGGATTTCGATCTTGACTTTCCGATGGCATCAATTTCGTCAATGAAG 2714440 Query 9725 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 | ||| ||||| |||| ||||| | |||| || || || ||||| | ||| Sbjct 2714441 ATGATACATGGGGTGTTTTTTCGAGCAATAGCAAATAGGTCGCGAACACGGGAAGGGCCA 2714500 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGA 9843 || ||||| ||||||||||| || | | | || || || | |||||| ||| || Sbjct 2714501 ACGCCAACGAACATCTCCACGAATTCAGAGCCGCTGACGCTGTA-GAAGGGAACAGCGGA 2714559 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 9903 || || ||| | || || || ||||| ||||| ||||||||| || | || | Sbjct 2714560 CTCGCCGGCAGTCGCCTTTGCTAGTAGAGTTTTACCGGTACCTGGCGGCCCAGAAAGAAT 2714619 Query 9904 GGCACCTCGTGGAATCTTGGCGCC 9927 || ||||| || || || || || Sbjct 2714620 AGCTCCTCGAGGTATTTTCGCACC 2714643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258897111640